PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00089749001

Common Name

GSBRNA2T00089749001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 197aa MW: 22361.9 Da PI: 10.093

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00089749001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	110.8	1e-34	19	110	1	92
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 aCa+Ck++r+kC+++C+l+pyfpa+++k+f++vhk+FG+snv+k++++++ee+r+++ +sl++eA +r++dPv G++g +++++++l+ GSBRNA2T00089749001 19 ACASCKHQRKKCNNECILSPYFPARKNKEFQAVHKVFGVSNVQKMVRTVREEDRTKLSESLTWEALWRQKDPVLGSYGEYRRISEELKVY 108 7***********************************************************************************999887 PP DUF260 91 ka 92 k+ GSBRNA2T00089749001 109 KS 110 75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.867	18	118	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.5E-32	19	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MQRNSNNNNI SNNPSSHQAC ASCKHQRKKC NNECILSPYF PARKNKEFQA VHKVFGVSNV 60 QKMVRTVREE DRTKLSESLT WEALWRQKDP VLGSYGEYRR ISEELKVYKS LVHNQPLIGW 120 DNNQRVLNNN NKNGLAVNSS GSGGFTVNNN GVGVNRDVIN GGYLSRSGYE NLRQDQRQQC 180 YAVINGFKQH YLPLSN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-18	11	96	3	88	LOB family transfactor Ramosa2.1
5ly0_B	1e-18	11	96	3	88	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.11103	0.0	flower

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00089749001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013655299.1	1e-143	LOB domain-containing protein 2
Refseq	XP_022546537.1	1e-143	LOB domain-containing protein 2
Swissprot	Q9LNB9	1e-111	LBD2_ARATH; LOB domain-containing protein 2
TrEMBL	A0A078FRW4	1e-142	A0A078FRW4_BRANA; BnaA08g28560D protein
TrEMBL	A0A291LQY0	1e-142	A0A291LQY0_BRARR; Transcription factor LBD2
TrEMBL	A0A397YKC7	1e-142	A0A397YKC7_BRACM; Uncharacterized protein
STRING	Bra030647.1-P	1e-123	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10539	26	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	7e-85	LOB domain-containing protein 2

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]