PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00089804001
Common NameGSBRNA2T00089804001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 591aa    MW: 65843.4 Da    PI: 9.5987
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00089804001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.4e-07488537147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                          r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  GSBRNA2T00089804001 488 RRPFSVAEVEALVQAVERLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 537
                          6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.864483542IPR017930Myb domain
SMARTSM007177.0E-7487540IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-10488538IPR009057Homeodomain-like
CDDcd116609.05E-17489539No hitNo description
SuperFamilySSF466891.89E-15489570IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MVLQTRLDYG FNGYEVPPTP RAARSPRKSA FKKKSENNQI SSSFDLLAAV AGKLLLESGG  60
VSSSSSNNAS GDNNEDQCGG KKESGDQMVV GETHCDHHHD NNAERSFFVS EILPKAHEME  120
SFNRSPNPNK DFLFGSTSGI TYEYSSEKLG TQELAYEEAK IHNGDCFRSD SNGKKPMLER  180
LNCEPELSRN KDKHHIDNSL NGMENNDGEN FSALKKVMSS KYCKVSSNQK DTMVAGSDLD  240
LKPGYYSKKH CFKSLRSEKK YPIKKRRYFD GYTASQSEET VRNEGLSGSP RKAFLSTIAC  300
QKQPALQSRD SHVKLGIKSF RVPELSIEVP ETATIGSLKR TVLEAVTTIL EGGLRIGVLV  360
HGKKVRDDNK MLLQTGISLD TLSDTLSFCL ETNPPQSTKP LSPKDSDYMR PCYVPHTITR  420
CLPSLGKHAK PSDSVESDLD SKPSSPFRAK PVYSRALIPV SPPLHAQALN VVPPRKPKRS  480
EVAQRRIRRP FSVAEVEALV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT  540
ARISPQQRRG EPVPQELLDR VLMAHAYWSQ QQGKQQLLEG PQNLETSLGL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-574755774106Telomere binding protein TBP1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}.
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00089804001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110938.10.0PREDICTED: telomere repeat-binding protein 5-like
RefseqXP_013657560.10.0telomere repeat-binding protein 5-like isoform X1
SwissprotQ6R0E30.0TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A078FRZ60.0A0A078FRZ6_BRANA; BnaA08g29010D protein
STRINGBra030689.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32402539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.10.0TRF-like 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]