PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00090015001
Common NameGSBRNA2T00090015001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 224aa    MW: 25482.8 Da    PI: 6.5207
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00090015001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.97.4e-20247449
                         -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         e + n qvtfskRr+g++KKA+EL++LC++   vi+fs+ +k++ +
  GSBRNA2T00090015001  2 EKDANLQVTFSKRRQGLFKKASELCTLCNVGMGVIVFSPGQKVFSF 47
                         567899************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.4E-17150IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.811151IPR002100Transcription factor, MADS-box
PfamPF003199.1E-22247IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-21272IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-81328IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-82849IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MEKDANLQVT FSKRRQGLFK KASELCTLCN VGMGVIVFSP GQKVFSFGNP DVKSVIDNFK  60
NHNHSPLLYT QDGLNPTIQN LNSLLTQELT ILEMEKKRKK ELDEIKNKRE EIEKWWEKSP  120
NQLDLSQNTC LTRALENLKM ELVSQRSQQL QAIDPPNYYG ESYNNIVGGG NVDLFDQTSM  180
FDGNASNYNP NMIISNHGPM VENNHKTNVF EAFRPRSNLN LPE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19599KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00090015001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635683.11e-165PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A078FRI91e-164A0A078FRI9_BRANA; BnaC04g15630D protein
TrEMBLA0A0D3BU381e-164A0A0D3BU38_BRAOL; Uncharacterized protein
STRINGBo4g070340.11e-165(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16574611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-56AGAMOUS-like 62
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]