PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00090256001

Common Name

GSBRNA2T00090256001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

SRS

Protein Properties

Length: 191aa MW: 21294.2 Da PI: 9.1642

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00090256001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	194.3	4e-60	6	148	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93 ++ +C+dCGnqakk+C+++RCRtCCk+++f+C+th+kstWvpa++r++++q ++ ++ ++ + + ++ kr +++ +s+ ss+ + GSBRNA2T00090256001 6 TGRRCEDCGNQAKKECVYMRCRTCCKAKAFHCQTHIKSTWVPAYRRSHKHQSQTPPQPQQ---QPLSITNPKRLIEQHPTSSPSSSGV-- 90 5679*****************************************9977766654433...3444555555544445555555444.. PP DUF702 94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + ++t ++P+e+ss a frcv+vss+ddg+e++aYqt+v+igGhvf+GiL+dqGle+ GSBRNA2T00090256001 91 ---RIGTSTGHFPAELSSVADFRCVKVSSIDDGKEQYAYQTTVNIGGHVFRGILHDQGLEK 148 ...45567799*********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	8.4E-57	7	147	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.4E-27	10	51	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	8.6E-30	98	146	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MMMMVTGRRC EDCGNQAKKE CVYMRCRTCC KAKAFHCQTH IKSTWVPAYR RSHKHQSQTP 60 PQPQQQPLSI TNPKRLIEQH PTSSPSSSGV RIGTSTGHFP AELSSVADFR CVKVSSIDDG 120 KEQYAYQTTV NIGGHVFRGI LHDQGLEKVV LDHQPAHHDQ ALLLPSSSRP LMITSHFTDF 180 MSGTHTKSLH *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00090256001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC006841	2e-61	AC006841.7 Arabidopsis thaliana chromosome 2 clone F3K23 map mi148, complete sequence.
GenBank	CP002685	2e-61	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013746903.2	1e-138	protein SHI RELATED SEQUENCE 3-like
Swissprot	Q9SJT8	3e-85	SRS3_ARATH; Protein SHI RELATED SEQUENCE 3
TrEMBL	A0A078FRX7	1e-140	A0A078FRX7_BRANA; BnaA04g12150D protein
TrEMBL	A0A397ZT16	1e-140	A0A397ZT16_BRACM; Uncharacterized protein
STRING	Bra030301.1-P	1e-127	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9188	26	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21400.1	2e-84	SHI-related sequence3

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]