PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00090266001

Common Name

GSBRNA2T00090266001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

BBR-BPC

Protein Properties

Length: 287aa MW: 31946.2 Da PI: 9.0508

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00090266001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	65.7	2e-20	31	109	15	95
GAGA_bind 15 epaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasal 95 e++++l +++++ms++aerda+++ern+a+s+k +a+a+rd a+lqrdkalaer+kal+erdn+++al+++ensl++al GSBRNA2T00090266001 31 EQHNALV--MNKKIMSILAERDAAVHERNQAVSAKLEALAARDQALLQRDKALAERDKALIERDNAFAALQHHENSLNFAL 109 2556666..99****************************************************************998655 PP
2	GAGA_bind	244.3	8.3e-75	142	286	154	301
GAGA_bind 154 qrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyP 243 ++ k++ke+k k kk +e+ + v++++ ++ k+++++ ++ln v++De t+PvPvC+CtG+ +qCYkWGnGGWqS+CCttt+S yP GSBRNA2T00090266001 142 KEIKRKKENKP-KGKKVGEDLNLLVAAPG--KKCKKDWDTNHFGLNLVTFDEKTMPVPVCTCTGSAHQCYKWGNGGWQSSCCTTTLSLYP 228 23333333333.34455777777788888..57******************************************************* PP GAGA_bind 244 LPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 LP+++++r++R++grKmS+++f++lL++LaaeGydls vDLkd+WA+HGtn+++ti+ GSBRNA2T00090266001 229 LPQKPNKRHSRVGGRKMSGNVFSRLLSHLAAEGYDLSSRVDLKDYWARHGTNRYITIK 286 *******************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	4.4E-129	1	286	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	7.6E-88	18	286	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MENGGQYANG SDYLKGAHSM WNMLPHHQIK EQHNALVMNK KIMSILAERD AAVHERNQAV 60 SAKLEALAAR DQALLQRDKA LAERDKALIE RDNAFAALQH HENSLNFALS GGKRCQGADD 120 DDDDVLFTID DLCPTTSTNP TKEIKRKKEN KPKGKKVGED LNLLVAAPGK KCKKDWDTNH 180 FGLNLVTFDE KTMPVPVCTC TGSAHQCYKW GNGGWQSSCC TTTLSLYPLP QKPNKRHSRV 240 GGRKMSGNVF SRLLSHLAAE GYDLSSRVDL KDYWARHGTN RYITIK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.14579	1e-139	seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the whole ovule. {ECO:0000269\|PubMed:14731261, ECO:0000269\|PubMed:21435046}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00090266001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009140266.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE4
Refseq	XP_013743517.1	0.0	protein BASIC PENTACYSTEINE4-like
Refseq	XP_018514043.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE4
Swissprot	Q8S8C6	1e-157	BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBL	A0A078FN78	0.0	A0A078FN78_BRANA; BnaA04g12060D protein
STRING	Bra030308.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4090	26	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21240.2	1e-143	basic pentacysteine 4

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]