PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00090310001

Common Name

GSBRNA2T00090310001, LOC106453291, LOC106453292

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HSF

Protein Properties

Length: 125aa MW: 14599 Da PI: 10.8518

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00090310001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	41.6	3.3e-13	2	83	5	95
HHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT-.-HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 5 klyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhs.nfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 klyei++d++l+ +isw+ +++nsf+v+d +f +k+L+k + nf+ Fv L gF+++ eF hk+F +++ ll GSBRNA2T00090310001 2 KLYEIVNDHSLDAIISWTnNSNNSFIVWDVARFCTKILSKSVEFGwNFSEFVSELRHHGFQRIGW-----------FEFGHKNFVRSRPWLL 82 9***************7778************998776449***********99864...........3455555555555444 PP X CS HSF_DNA-bind 95 e 95 + GSBRNA2T00090310001 83 K 83 4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	5.2E-7	1	88	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.0E-16	1	85	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	7.8E-15	1	85	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	7.3E-15	2	85	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MKLYEIVNDH SLDAIISWTN NSNNSFIVWD VARFCTKILS KSVEFGWNFS EFVSELRHHG 60 FQRIGWFEFG HKNFVRSRPW LLKRMVPSKA WDDKFGAKLK AKKDKAKAKK AKAKVVRLLE 120 NLQI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	110	KAKAKKA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00090310001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013751010.1	4e-86	heat stress transcription factor A-1d-like
Refseq	XP_013751011.1	4e-86	heat stress transcription factor A-1d-like
TrEMBL	A0A078FS33	9e-85	A0A078FS33_BRANA; BnaA04g11750D protein
STRING	Bra030341.1-P	2e-67	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3839	14	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77570.1	7e-27	Winged helix-turn-helix transcription repressor DNA-binding

Link Out ? help Back to Top
Entrez Gene	106453291 \| 106453292

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]