PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00090445001
Common NameGSBRNA2T00090445001, LOC106413612
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 293aa    MW: 32555.2 Da    PI: 8.7135
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00090445001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.7e-1758108155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ++y+GVr+++ +gr++AeIrdp++   + r +lg+f+tae+Aa a++ a+++++g
  GSBRNA2T00090445001  58 TRYRGVRRRP-WGRYAAEIRDPTS---KERRWLGTFDTAEQAACAYDCAAREFRG 108
                          68********.**********854...4999*********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.3E-1058108IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2159117IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-2859116IPR001471AP2/ERF domain
PROSITE profilePS5103222.43159116IPR001471AP2/ERF domain
SMARTSM003806.2E-3259122IPR001471AP2/ERF domain
PRINTSPR003672.4E-96071IPR001471AP2/ERF domain
CDDcd000186.48E-2266115No hitNo description
PRINTSPR003672.4E-98298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEEALRKFNE STHSFIPGYE PDPIPLTRIF ANDANSPQVN NTPSSKEAIV TITGSGRTRY  60
RGVRRRPWGR YAAEIRDPTS KERRWLGTFD TAEQAACAYD CAAREFRGSK ARTNYTYPVT  120
NPVAEPRFSF SSKKSMKAVR SPIPSPQKMN TKSLLWYSSH ETATNDSSTS SFSLTKTASI  180
SSSADENYTE FFPQEHSDSG LLQDIVQEFL KKKRNQPPPL IPPPPPSPPM VGHLKNFREF  240
SANSLFQPMV ETSKLDCYGN ISYQDGDSGF FYGMSSVADG GFTYGSDAWG LS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1753115871Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First observed in the embryo at four-cell stage. At the globular stage, localized in cotyledons primordia. Later confined to embryonic cotyledons tips. Expressed from embryogenesis onward in the central zone of the shoot apical and floral meristems, in organ anlagen, and (transiently) in the distal domains of organ primordia. {ECO:0000269|PubMed:12615942, ECO:0000269|PubMed:17376809}.
UniprotTISSUE SPECIFICITY: Expressed in shoot apical and floral meristems, and in organ primordia. Transient expression during shoot regeneration. {ECO:0000269|PubMed:11752375, ECO:0000269|PubMed:12615942, ECO:0000269|PubMed:17376809}.
Functional Description ? help Back to Top
Source Description
UniProtRegulates gene expression patterns in meristems and thus modulates organ development. Required for correct embryo patterning and cotyledon organogenesis. Modulates auxin signaling pathway in early embryos. Involved in the cytokinin signaling pathway that promotes shoot regeneration. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11752375, ECO:0000269|PubMed:12615942, ECO:0000269|PubMed:17376809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00090445001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:11752375}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013709808.10.0ethylene-responsive transcription factor ESR1
SwissprotQ9SAD42e-80ESR1_ARATH; Ethylene-responsive transcription factor ESR1
TrEMBLA0A078FUL10.0A0A078FUL1_BRANA; BnaC08g40750D protein
STRINGBra026942.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140721723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.13e-58ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  3. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]
  4. Capua Y,Eshed Y
    Coordination of auxin-triggered leaf initiation by tomato LEAFLESS.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(12): p. 3246-3251
    [PMID:28270611]
  5. Chandler JW,Werr W
    DORNRÖSCHEN, DORNRÖSCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis.
    J. Exp. Bot., 2017. 68(13): p. 3457-3472
    [PMID:28859377]
  6. Luo L,Zeng J,Wu H,Tian Z,Zhao Z
    A Molecular Framework for Auxin-Controlled Homeostasis of Shoot Stem Cells in Arabidopsis.
    Mol Plant, 2018. 11(7): p. 899-913
    [PMID:29730265]