PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00090610001

Common Name

GSBRNA2T00090610001, LOC106351522

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 320aa MW: 34495.9 Da PI: 8.0154

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00090610001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.5e-05	5	27	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F++ +L Hir H GSBRNA2T00090610001 5 FVCKFCNKKFPSGKSLGGHIRIH 27 89*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.7E-5	2	28	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.48E-8	3	27	No hit	No description
PROSITE profile	PS50157	11.094	5	32	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0065	5	27	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	3.6E-6	5	27	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	7	27	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.48E-8	260	287	No hit	No description
PROSITE profile	PS50157	9.162	265	292	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.51	265	287	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	2.1E-10	265	287	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	267	287	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MEKEFVCKFC NKKFPSGKSL GGHIRIHSPQ SSVHSDSFIG KNNNSKKRLV DQRALASHNY 60 EGEKKMVMEM DTQSASETTT TSSGPAMIKR SKKQPSSESF STVSWSSDPG IDQGSKDLMF 120 LHLGRKDFNL PESSENNSEI LETKSSSGEL LKTPDKVAVG DDSDDSDNGS SDSDYFMSGP 180 KKSDVSVGGS LRNTGVGSGF NSFKNGDELG VKEGGSKHEL GKSKRVSPSY GSDSYEDKKN 240 SKFHRSSDGG MVKKASGGDK NSKGHECPVC FKVYSSGQAL GGHKRSHTIA NQAQQRAKRN 300 AADMQFGLYL PAEEDSDDD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00090610001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189429	0.0	AC189429.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB066M16, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013646766.1	0.0	zinc finger protein ZAT1
TrEMBL	A0A078FUU4	0.0	A0A078FUU4_BRANA; BnaA09g29020D protein
STRING	Bra024706.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20351	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26590.1	3e-54	C2H2-like zinc finger protein

Link Out ? help Back to Top
Entrez Gene	106351522

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]