PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00090670001
Common NameGSBRNA2T00090670001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 230aa    MW: 26385.4 Da    PI: 4.6256
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00090670001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.54e-1768121356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k++++t+ ql  Lee Fe+++ +  +++  LA+klgL+ +qV vWFqNrRa+ k
  GSBRNA2T00090670001  68 KKRKLTPIQLCLLEESFEEDKRLEPDRKLWLAEKLGLQPTQVAVWFQNRRARFK 121
                          56799***********************************************98 PP
2HD-ZIP_I/II111.74.9e-3668158292
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          kkr+l+  q+ lLEesFee+++Lep+rK  la++Lglqp qvavWFqnrRAR+kt+qlE d+++Lk++y +lk++++ L +++++L++++
  GSBRNA2T00090670001  68 KKRKLTPIQLCLLEESFEEDKRLEPDRKLWLAEKLGLQPTQVAVWFQNRRARFKTRQLELDCDSLKASYAKLKTDRDILFRQNQALENKV 157
                          9*************************************************************************************9987 PP

          HD-ZIP_I/II  92 k 92 
                          +
  GSBRNA2T00090670001 158 A 158
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.1E-1849125IPR009057Homeodomain-like
PROSITE profilePS5007116.29363123IPR001356Homeobox domain
SMARTSM003893.5E-1766127IPR001356Homeobox domain
CDDcd000864.69E-1568124No hitNo description
PfamPF000461.8E-1468121IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-1770127IPR009057Homeodomain-like
PRINTSPR000315.6E-594103IPR000047Helix-turn-helix motif
PROSITE patternPS00027098121IPR017970Homeobox, conserved site
PRINTSPR000315.6E-5103119IPR000047Helix-turn-helix motif
PfamPF021833.6E-13124165IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MENSNIDSEV FSWFQNQNQN HCLKFHSSCF PPTSQSALYG SSSMSNTETN TVDEEDVCES  60
NKMRETTKKR KLTPIQLCLL EESFEEDKRL EPDRKLWLAE KLGLQPTQVA VWFQNRRARF  120
KTRQLELDCD SLKASYAKLK TDRDILFRQN QALENKVALL KEKLQFQEKL ETQSMEAEKL  180
GEEGSSVKSD NTQYTEEEEG LGSNQYSFPE LAALGFYYDP TMSASNLGL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in flowers and siliques. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00090670001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0003481e-100AC000348.2 Genomic sequence for Arabidopsis thaliana BAC T7N9 from chromosome I, complete sequence.
GenBankCP0026841e-100CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115435.11e-168PREDICTED: homeobox-leucine zipper protein ATHB-54
SwissprotP0CJ651e-131ATB54_ARATH; Homeobox-leucine zipper protein ATHB-54
TrEMBLA0A078FTF51e-168A0A078FTF5_BRANA; BnaA09g29480D protein
STRINGBo5g041500.11e-153(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM159081314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27045.11e-123HD-ZIP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]