PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00090682001
Common NameGSBRNA2T00090682001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CAMTA
Protein Properties Length: 181aa    MW: 21409.7 Da    PI: 8.7677
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00090682001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-157.13.6e-1854923775
                 CG-1 37 gsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKv 75
                            +L++rk +ryfrkDG++ +kkkdgktv+EdhekLK 
  GSBRNA2T00090682001 54 RITLLFDRKELRYFRKDGHNRRKKKDGKTVKEDHEKLKL 92
                         4579**********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143717.17324155IPR005559CG-1 DNA-binding domain
SMARTSM010762.9E-436118IPR005559CG-1 DNA-binding domain
PfamPF038594.3E-125692IPR005559CG-1 DNA-binding domain
PfamPF000699.4E-790128IPR000719Protein kinase domain
SuperFamilySSF561127.15E-1291141IPR011009Protein kinase-like domain
Gene3DG3DSA:1.10.510.108.7E-1091131No hitNo description
PROSITE patternPS001080104116IPR008271Serine/threonine-protein kinase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MLTWSLVFSL RCLSSKIFYR YFHIISGSPC FNLSGMFSGE YEMFPERLKQ GDFRITLLFD  60
RKELRYFRKD GHNRRKKKDG KTVKEDHEKL KLLLAVKQCH EKGICHGDIK CENVLVTSWN  120
WLYLADFASF KPTYIPYDDP SDFSFFHDTR ERRLSLCPWY ISEVAVTGVR LMIEAEYSWG  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dfz_B2e-1858153109193Serine/threonine-protein kinase VPS15
5kc2_B2e-1858153109193Serine/threonine-protein kinase VPS15
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17378RRKKKD
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In anthers, barely detected in microsporocytes at stage 6, but accumulates strongly in tetrads at stage 7, microspores, mature pollen grains, and tapetum cells. Also detectable in the growing pollen tubes on the stigma. {ECO:0000269|PubMed:21833541, ECO:0000269|PubMed:22361507}.
UniprotTISSUE SPECIFICITY: Mainly expressed in anthers, pollen grains and pollen tubes, and, to a lower extent, in other tissues and organs including seedlings, roots, stems, leaves, flowers, pitils and siliques. {ECO:0000269|PubMed:21833541, ECO:0000269|PubMed:22361507}.
Functional Description ? help Back to Top
Source Description
UniProtSerine/threonine-protein kinase required for cytoplasm to vacuole transport (Cvt) and autophagy as a part of the autophagy-specific VPS34 PI3-kinase complex I (By similarity). Required for pollen development and germination, probably via the modulation of phosphatidylinositol 3-phosphate (PI3P) formation and vacuolar organization (PubMed:21833541, PubMed:22361507). {ECO:0000250|UniProtKB:P22219, ECO:0000269|PubMed:21833541, ECO:0000269|PubMed:22361507}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00090682001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546021e-44AC254602.1 Capsella rubella clone CAP08-D12, complete sequence.
GenBankAL1615741e-44AL161574.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70.
GenBankCP0026871e-44CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022545873.13e-37probable serine/threonine-protein kinase vps15
SwissprotQ9M0E52e-34VPS15_ARATH; Serine/threonine-protein kinase VPS15
TrEMBLA0A078FUZ21e-131A0A078FUZ2_BRANA; BnaA09g29570D protein
STRINGBra024655.1-P1e-87(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.23e-15Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Mueller-Roeber B,Pical C
    Inositol phospholipid metabolism in Arabidopsis. Characterized and putative isoforms of inositol phospholipid kinase and phosphoinositide-specific phospholipase C.
    Plant Physiol., 2002. 130(1): p. 22-46
    [PMID:12226484]
  2. Lee JH, et al.
    Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.
    Plant Cell, 2008. 20(1): p. 152-67
    [PMID:18223036]
  3. Zhang Y, et al.
    Arabidopsis DDB1-CUL4 ASSOCIATED FACTOR1 forms a nuclear E3 ubiquitin ligase with DDB1 and CUL4 that is involved in multiple plant developmental processes.
    Plant Cell, 2008. 20(6): p. 1437-55
    [PMID:18552200]
  4. Xu N, et al.
    Arabidopsis AtVPS15 is essential for pollen development and germination through modulating phosphatidylinositol 3-phosphate formation.
    Plant Mol. Biol., 2011. 77(3): p. 251-60
    [PMID:21833541]
  5. Wang WY, et al.
    Arabidopsis AtVPS15 plays essential roles in pollen germination possibly by interacting with AtVPS34.
    J Genet Genomics, 2012. 39(2): p. 81-92
    [PMID:22361507]
  6. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]