PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00090982001
Common NameGSBRNA2T00090982001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 596aa    MW: 67605.8 Da    PI: 6.5105
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00090982001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.71.1e-19658154
                  NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkae 54
                         +ppGfrFhPtdeelv +yLk+k++g+++el e+i+e+d+yk+ePwdLp +v++e
  GSBRNA2T00090982001  6 MPPGFRFHPTDEELVIYYLKRKINGRTIEL-EIIPEIDLYKCEPWDLPDAVDSE 58
                         79****************************.99***************644442 PP
2NAM105.95e-3310818353129
                  NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          +++ ew+fFs+rd+ky++g+r+nratk+gyWkatgkd++v+s ++++vg+kktLv+y+grap+g++tdWvmheyrle
  GSBRNA2T00090982001 108 SKDLEWFFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVTS-HSRTVGTKKTLVYYRGRAPHGSRTDWVMHEYRLE 183
                          4667**************************************.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-19455IPR003441NAC domain
PROSITE profilePS5100554.5796205IPR003441NAC domain
PfamPF023652.7E-287182IPR003441NAC domain
SuperFamilySSF1019413.27E-39107205IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MAPVSMPPGF RFHPTDEELV IYYLKRKING RTIELEIIPE IDLYKCEPWD LPDAVDSETN  60
SEDRVKKGFG SFSFTLNFCF IKKCSPFVFY LVFLILILRT LRKSLLPSKD LEWFFFSPRD  120
RKYPNGSRTN RATKAGYWKA TGKDRKVTSH SRTVGTKKTL VYYRGRAPHG SRTDWVMHEY  180
RLEEQECDSK SGIQDAYALC RVFKKSALAN KLEEQHHGMK RKKATTNSEK STSSTCLYSD  240
GMYENLENSG YPVSPDHGLT QLGNISSSDM ETIENKWSHS MSHDTSYNFP AQSQFCSQYG  300
TITYPPSKAE IAFECARLKN RMLPPAPPLH VEDLAHSEHL GTNVANDTDQ MLSKIIALAQ  360
ASHEPHNSLG SWEFASASGN FQGDVCYPGE KASGSWVEAN MKAVDMQAHD GRFKEERIVE  420
NLRWVGVSNK ELEKSFIEEH STVVPIEDIW SYRTDSHEHQ DGEGVNNNGD VDDVYTLEFS  480
ENELNANNSD KINNDDHDAT SSPRFEMVNK VEVSHGLSVT TRQVTNTCFQ QIVPSQTVIV  540
YINPTGTVNC GHEKKLTEEV HVVKQINPRI DSFVSKILGP WRRFAYLLVS FISSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-47220511168Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00090982001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026841e-80CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF12P191e-80AC009513.2 Sequence of BAC F12P19 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127458.10.0PREDICTED: LOW QUALITY PROTEIN: NAC domain-containing protein 86
TrEMBLA0A078FUA10.0A0A078FUA1_BRANA; BnaA02g12310D protein
STRINGBra039745.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101122632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.10.0NAC domain containing protein 28
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]