PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00091100001

Common Name

GSBRNA2T00091100001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Protein Properties

Length: 219aa MW: 25107.8 Da PI: 7.9475

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00091100001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	44.3	3.3e-14	38	125	5	99
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ++ ++ k++++ +p +f+ + g ++ + t+t++++ g + ++++ ++++++++++kGW+eF++a+ + +g f+ F ++g+s+f +v GSBRNA2T00091100001 38 MILLSTIKEKMMKIPARFV-RLG--PKLTDTVTIQTPVGFKRSIRI--KRTGDQVWFEKGWNEFAEAHSISQGHFLYFCYEGNSSF--RV 120 55678889999******.565..44777************..***********************************9..99 PP EEE-S CS B3 95 kvfrk 99 ++f+ GSBRNA2T00091100001 121 MIFDV 125 99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.41E-19	29	126	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.2E-17	31	126	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.07E-13	33	124	No hit	No description
PROSITE profile	PS50863	11.589	34	126	IPR003340	B3 DNA binding domain
SMART	SM01019	7.1E-13	35	126	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.6E-12	38	124	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MKSNMNTSRR SSARITSAAT QRQQKPEPEP GVKKFIKMIL LSTIKEKMMK IPARFVRLGP 60 KLTDTVTIQT PVGFKRSIRI KRTGDQVWFE KGWNEFAEAH SISQGHFLYF CYEGNSSFRV 120 MIFDVSASEI DYPMDKVHCI ESDDEVMEVM DTDDEEGFTR VDSSDNDSSD EEAIDLEKLL 180 KKKLRVNVKS ETINIGNVSR LKLKSCGFFF FFFFFSCV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.16115	1e-180	microspore-derived embryo\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00091100001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013602987.1	1e-118	PREDICTED: B3 domain-containing protein At1g49475 isoform X1
Refseq	XP_013720044.1	1e-118	B3 domain-containing protein At1g49475-like isoform X1
Swissprot	Q9XIB4	1e-86	Y1475_ARATH; B3 domain-containing protein At1g49475
TrEMBL	A0A078FU24	1e-160	A0A078FU24_BRANA; BnaA08g02660D protein
STRING	Bra014191.1-P	1e-123	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1591	25	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49475.1	2e-67	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]