PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00091220001
Common NameGSBRNA2T00091220001, LOC106365548, LOC106365655
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 307aa    MW: 34234.8 Da    PI: 10.1018
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00091220001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding452.4e-1461105147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  GSBRNA2T00091220001  61 RENWTEQEHDKFLEALHLFDRD-WKKIEAFVG-SKTVVQIRSHAQKY 105
                          789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.97E-1755111IPR009057Homeodomain-like
PROSITE profilePS5129415.656110IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-758111IPR009057Homeodomain-like
TIGRFAMsTIGR015578.7E-1859108IPR006447Myb domain, plants
SMARTSM007171.3E-1160108IPR001005SANT/Myb domain
PfamPF002492.0E-1261105IPR001005SANT/Myb domain
CDDcd001673.43E-963106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MVSLNARPAP FLDPVSVSFD SMASDSSDGF GFTPIATTPV TGRRDTASYK IRKPYTIKKS  60
RENWTEQEHD KFLEALHLFD RDWKKIEAFV GSKTVVQIRS HAQKYFLKVQ KSGANEHLPP  120
PRPKRKARHP YPQKASKNVA LPSHAIGSIP ASNAPLLQPA YLYSSSDSQY PASSSSSLNH  180
ESTNLPKPVI QEEPGVSATA LPKNRCYSTS NKEVKPNLPT VTEPNNEEQS CEKPHRVMPN  240
FAQVYRFIGS VFDPNTSGHI QRLKQMDPIN IETVLLLMRN LSVNLTSPEF TEQRKLISSY  300
SSKALK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.183190.0flower
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00091220001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ9372121e-73AJ937212.1 Arabidopsis thaliana mRNA for myb transcription factor LHY-CCA1-like4 (lcl4 gene).
GenBankAY5195131e-73AY519513.1 Arabidopsis thaliana MYB transcription factor (At4g01280) mRNA, complete cds.
GenBankBT0247111e-73BT024711.1 Arabidopsis thaliana At4g01280 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013660427.10.0protein REVEILLE 5-like
RefseqXP_013660561.10.0protein REVEILLE 5
RefseqXP_022547950.10.0protein REVEILLE 5-like
SwissprotC0SVG51e-148RVE5_ARATH; Protein REVEILLE 5
TrEMBLA0A078ICE00.0A0A078ICE0_BRANA; BnaA09g00080D protein
STRINGBra037365.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.11e-126MYB_related family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]