PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00091404001
Common NameGSBRNA2T00091404001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 564aa    MW: 62905.2 Da    PI: 4.4981
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00091404001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.52.3e-48131392128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          +pGfrFhPtdeelv++yLk+k+ +++l++ ++i  vd+yk++P++Lp +  +k+++++w++F++r++ky++  r+ r t++gyWkatgkd
  GSBRNA2T00091404001  13 APGFRFHPTDEELVMYYLKRKICKRRLRV-NAIGVVDVYKLDPEELPgQsVLKTGDRQWFYFTPRNRKYPNAARSGRGTATGYWKATGKD 101
                          69***************************.89**************96347788999********************************* PP

                  NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          + ++  +++ vglkktLvfy+grap+ge+tdWvmhey++
  GSBRNA2T00091404001 102 RVIVY-NSRSVGLKKTLVFYRGRAPNGERTDWVMHEYTM 139
                          ****9.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100552.13112162IPR003441NAC domain
SuperFamilySSF1019411.16E-5413162IPR003441NAC domain
PfamPF023653.9E-2514138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MADSCLKGGK FSAPGFRFHP TDEELVMYYL KRKICKRRLR VNAIGVVDVY KLDPEELPGQ  60
SVLKTGDRQW FYFTPRNRKY PNAARSGRGT ATGYWKATGK DRVIVYNSRS VGLKKTLVFY  120
RGRAPNGERT DWVMHEYTMD EQELGRCKNA KEYYALYKLF KKSGAGPKNG EDYGAPFQEE  180
EWVDDDYEVA VPEEPVVRFE DTPRVDNATL FNPVNVQLDD IDEILNGIPY APGVPQTCFN  240
GLASSFPQVN DLLPYVPLFH LFFVNNSSGE FLPNVQPYNM PSTFESTEVT SVPNDSGVGP  300
FVFEQEDYIE MDDLLTSELG ASSTEKPEQF LDPGEFREFN EFDQLFHDVS MFLDMEPILQ  360
GTSADPSSLS NFAHTSDQED QSLYQQFQDQ TPENKLNNIM DPNPNLSQFT DNLWFQDDYQ  420
AVLFDQPQSI ISGAFASPSS GVDVIPGSTN LTTSVTAQDQ EGENGGGGTS PFSSALWAFM  480
DSIPSTPASA CEGPINRTFV RMSSFSRMRF SGKANGTPAT TTVVAKKRSR NRGFLVLSIV  540
GALCAIFWVF IATVRASGRP VFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-441413917140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13138RKICKRRL
2526531KRSRNR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.229872e-65leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00091404001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013742409.10.0NAC domain-containing protein 17-like
SwissprotQ9XIC50.0NAC17_ARATH; NAC domain-containing protein 17
TrEMBLA0A078IF600.0A0A078IF60_BRANA; BnaC06g08090D protein
STRINGBo6g044390.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.10.0NAC domain containing protein 17
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  4. Van Aken O,Ford E,Lister R,Huang S,Millar AH
    Retrograde signalling caused by heritable mitochondrial dysfunction is partially mediated by ANAC017 and improves plant performance.
    Plant J., 2016. 88(4): p. 542-558
    [PMID:27425258]
  5. Hu Z, et al.
    Mitochondrial Defects Confer Tolerance against Cellulose Deficiency.
    Plant Cell, 2016. 28(9): p. 2276-2290
    [PMID:27543091]
  6. Chi YH, et al.
    The membrane-tethered NAC transcription factor, AtNTL7, contributes to ER-stress resistance in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2017. 488(4): p. 641-647
    [PMID:28088515]
  7. Van Aken O,Pogson BJ
    Convergence of mitochondrial and chloroplastic ANAC017/PAP-dependent retrograde signalling pathways and suppression of programmed cell death.
    Cell Death Differ., 2017. 24(6): p. 955-960
    [PMID:28498364]
  8. Cheng P, et al.
    The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 182
    [PMID:29497438]