PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00091951001
Common NameGSBRNA2T00091951001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 336aa    MW: 37459.7 Da    PI: 6.2924
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00091951001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH231.4e-07246286954
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r+RR+r+ +++  L+ l+P       +K++ a++L +A +Y+k L
  GSBRNA2T00091951001 246 ARQRRERVSEKIRVLQNLVPGG-----TKMDTASMLDEAANYLKFL 286
                          69******************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.805237286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-13242301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-12243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.02E-10243291No hitNo description
Gene3DG3DSA:4.10.280.102.0E-11245295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-5246286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEGLESVYAQ AMYGMTRESK IMEHQGSDLI WGGNELSSCF MSDIGIIGET QHHQHVGNRA  60
SSIDPSSIDC LLSATTNSNN ISTEDDEGIS VLFSDCQTLW SFGGVSPAES ENREITTETT  120
TTTTKPKSFK RNRGNRDETG NHFCLVGHAQ EDSEKGNFKL IYDENQLKSK KPRTEKDRDG  180
STNISFRQHS ISLSDNVEPD AEAIAQMKEM IYTAAAFRPV NLGLETVEKP KRKNVKVSTD  240
PQTVAARQRR ERVSEKIRVL QNLVPGGTKM DTASMLDEAA NYLKFLRAQV KALENLRPKL  300
DPTNFSFSSP SSFPLFHPSF IPFQNPNQVH HHQEC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246251RQRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.239550.0vegetative meristem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00091951001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013741144.10.0transcription factor bHLH87-like
SwissprotQ8S3D20.0BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A078IHK20.0A0A078IHK2_BRANA; BnaA03g36230D protein
STRINGBra001826.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79602641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]