PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00092085001
Common NameGSBRNA2T00092085001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 202aa    MW: 23518.4 Da    PI: 4.4775
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00092085001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.41.2e-1881441128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                          lp+GfrF+Ptd e+ ++ L+k+v +++ +++ +   v +e+ di++ +P+dLp     +e+++yf++k+ +++ t   +n   ++++Wk+
  GSBRNA2T00092085001   8 LPVGFRFRPTDCEISKYLLTKNVMEEQpMKIRNvryVPEEChDIFSKHPRDLPGY--PRETDLYFYCKKLSSEVT---TN---SHSIWKQ 89 
                          79************9998988888777644444222456669***********43..47899******9886643...33...3579*** PP

                  NAM  86 tgkdkevlsk..kgelvglkktLvfy..........kgrapkgektdWvmheyrl 128
                           g+d++vl+   +++lvg+k+ +++             ++ k+++ +W+m+e +l
  GSBRNA2T00092085001  90 IGEDTDVLDPknNDALVGIKRPFTLVdheeesddilLSDEDKPSQYNWFMDEISL 144
                          ********98666677*****99999666655555437888888*******9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.29E-225161IPR003441NAC domain
PROSITE profilePS5100526.068161IPR003441NAC domain
PfamPF023652.6E-109143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MELKLRGLPV GFRFRPTDCE ISKYLLTKNV MEEQPMKIRN VRYVPEECHD IFSKHPRDLP  60
GYPRETDLYF YCKKLSSEVT TNSHSIWKQI GEDTDVLDPK NNDALVGIKR PFTLVDHEEE  120
SDDILLSDED KPSQYNWFMD EISLPLTVSE TDWVLCHVFR KIKPEFESKE EEEEEESVFA  180
KSLDLLREND GNVLPPSHSP P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00092085001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013746840.11e-146NAC domain-containing protein 62-like
TrEMBLA0A078IG391e-145A0A078IG39_BRANA; BnaA04g10830D protein
TrEMBLA0A3P6C3671e-145A0A3P6C367_BRACM; Uncharacterized protein
STRINGBo4g140840.11e-130(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86041736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.11e-65NAC family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]