PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00092092001

Common Name

GSBRNA2T00092092001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 221aa MW: 24076.8 Da PI: 7.3699

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00092092001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	97.7	2.2e-30	40	114	4	74
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....e 74 ++++ +++h kv+gR+ RvRl+ +caar+F+L++eLG+++d++t++WLl+ a+p+i+ +tgt+ ++a+++ GSBRNA2T00092092001 40 QTKSRKDRHLKVEGRGGRVRLPPLCAARIFQLTRELGHKTDGETLQWLLRHAEPSIISATGTGIKPATDSvsqpP 114 67899*********************************************************8888855433332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.0E-24	43	175	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	24.315	44	98	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MDPNLLNPSE TETEVKKVLN NTVEGKRKWK QKGKEGREIQ TKSRKDRHLK VEGRGGRVRL 60 PPLCAARIFQ LTRELGHKTD GETLQWLLRH AEPSIISATG TGIKPATDSV SQPPPHAVDL 120 NLDGGSRSQL ANGFWGNETG FGVGANPTGG GLDLNCGIGF LGFDFNGSSD MGFENNQMPQ 180 DGVLNPLIYQ QIGQEQAKVL QHHHHHPHEA QQENADKQGS *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00092092001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009140061.1	1e-142	PREDICTED: transcription factor TCP6
Swissprot	Q9FLM6	8e-65	TCP6_ARATH; Transcription factor TCP6
TrEMBL	A0A078IHS7	1e-161	A0A078IHS7_BRANA; BnaA04g10760D protein
STRING	Bra025528.1-P	1e-141	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15743	14	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41030.1	1e-62	TCP family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]