PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00092093001
Common NameGSBRNA2T00092093001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 705aa    MW: 80222.2 Da    PI: 6.438
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00092093001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.7e-07494536146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g WT+e+ el v+  k+ G++ Wk  a  mg  + ++++k+ w+ 
  GSBRNA2T00092093001 494 KGVWTKEDLELVVQHQKKRGND-WKVLADAMG--KHRNHVKDAWRR 536
                          799*******************.********9..7899***99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0093420491IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-4420477IPR009057Homeodomain-like
PROSITE profilePS500904.031423476IPR017877Myb-like domain
PROSITE profilePS500906.795489538IPR017877Myb-like domain
SMARTSM007170.39493540IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-4493536IPR009057Homeodomain-like
SuperFamilySSF466898.58E-7494554IPR009057Homeodomain-like
PfamPF139212.6E-8497555No hitNo description
PROSITE profilePS500906.377539607IPR017877Myb-like domain
PROSITE profilePS500906.876609662IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MVIAANFFKL DSPDSDTDEE RTTTSKVAVQ SQGTLAEPNS MKKKKKKKKA SVEKPDSDSD  60
GGGKKSKKHK KVSGGDEEIG VTEKALATTD DDDGKRDKGK RKRVDDLGDT AHKPKAKKKK  120
TIADSENSSK KKSKEKMQRE VSEVEVNNND CTKDANQIQA ENPEAGLKKS AKDPKKKRKN  180
KQIDDPEVEE GNKDSTEDAE KAQTEDPEAD LNKSKKKRKK KQIDDPEVEE DNKDSTEDAE  240
KRETENSEAD LNKSTKVPKK KSKKKQSDDP EVEEDNKDST VDAEKTQTED PEADLKKSSK  300
KKKKKKQNEA PEVDGNHKDS TEDADKTQTE AEENDLNSPE IAKKKSKKKK KKQSEDPEAE  360
VNKEKRKKKQ KGSKSGEVLT SPSPKSAKKV NFSDQVEVFP AESEESDEEE EEEEKVDLVR  420
GKRFTEEEDE LIKKSVLEYV DNHALGDEGI NMVMNCKAHK QVRGCWKEIA TALPWRPYTG  480
VYYRAHTLFE EGSKGVWTKE DLELVVQHQK KRGNDWKVLA DAMGKHRNHV KDAWRRIRLA  540
SKKRGHWSMK EYQSLFDLVN KDLRIKVFKE KHSKHGMLRD NIPWMAISDE LGTRDHAVCC  600
MKWYDQLTSP MVAKGIWANV DDYRLLDELT NLDAACVDDV DWDNLLDNRD GDVCRSRWNQ  660
MANHIGIPGS KTFAEQVEIL SQRYCPDIAE DREDFDNRPF DPED*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173180PKKKRKNK
2215219KKRKK
3299305KKKKKKK
4343351KKSKKKKKK
5349368KKKQSEDPEAEVNKEKRKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00092093001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140058.10.0PREDICTED: myb-like protein X isoform X1
TrEMBLA0A078IDK40.0A0A078IDK4_BRANA; BnaA04g10750D protein
STRINGBra025529.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63272537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-172MYB_related family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]