PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00092637001

Common Name

GSBRNA2T00092637001, LOC106392208

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 272aa MW: 30122.1 Da PI: 4.7388

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00092637001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93	2.1e-29	69	127	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+ + itY +Hnh+ GSBRNA2T00092637001 69 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPSKLMITYACDHNHP 127 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.0E-30	60	129	IPR003657	WRKY domain
PROSITE profile	PS50811	31.502	63	129	IPR003657	WRKY domain
SuperFamily	SSF118290	2.35E-25	64	129	IPR003657	WRKY domain
SMART	SM00774	6.4E-34	68	128	IPR003657	WRKY domain
Pfam	PF03106	1.1E-24	70	127	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MHRRGIQESD EEDETYNDVV PDSPSSCEDS KISKPTPKKS RRNMEKRVVS VPIADVEGSK 60 SRGEVYPPSD SWAWRKYGQK PIKGSPYPRG YYRCSSSKGC PARKQVERSR VDPSKLMITY 120 ACDHNHPFPS AANNKSHHHR TTAVVLKTAK KEENMEEEEE EEEEATMVAE EPAGLDLSHV 180 DSSLLLGGCY SELPEFGWFY DASISSSSGS SYGGSFLDVT LERGFSVGEE EDESLFGDLG 240 DLPDCASVFR RGTVATEEQH FGAIPFCDSS R*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-20	46	130	6	80	Disease resistance protein RRS1
5w3x_D	2e-20	46	130	6	80	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00092637001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU912413	0.0	EU912413.1 Brassica napus WRKY69-1 transcription factor (WRKY69-1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009116551.1	0.0	PREDICTED: probable WRKY transcription factor 69 isoform X1
Refseq	XP_013688459.1	0.0	probable WRKY transcription factor 69 isoform X1
Swissprot	Q93WV5	1e-152	WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBL	A0A078IGW3	0.0	A0A078IGW3_BRANA; BnaA09g55250D protein
STRING	Bra007413.1-P	1e-172	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12478	19	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58710.1	1e-139	WRKY DNA-binding protein 69

Link Out ? help Back to Top
Entrez Gene	106392208

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]