PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00092876001

Common Name

GSBRNA2T00092876001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 353aa MW: 39166.7 Da PI: 5.5242

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00092876001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.8	1e-32	155	209	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fv+a++qLGGse+AtPk++l+l++ +gLt++hvkSHLQkYR+ GSBRNA2T00092876001 155 KQRMRWTPELHEAFVDAINQLGGSERATPKAVLKLINSPGLTIYHVKSHLQKYRT 209 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.862	152	212	IPR017930	Myb domain
SuperFamily	SSF46689	6.81E-17	153	209	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.1E-30	154	211	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.6E-23	155	209	IPR006447	Myb domain, plants
Pfam	PF00249	4.5E-10	157	208	IPR001005	SANT/Myb domain
Pfam	PF14379	1.9E-22	243	289	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MNNPVPCQVF PLASGGTSSG YCNGTYVSAQ ERSSSQTRQS VETQSLPVTN QPQEQRDMSW 60 PEDQLQGFFD FPPQGESSSR AKSEWPDWAN QMISVDDGLE PNWSEILGDP NVLNQDSKIP 120 APSRDVARQE IVVSTQNQVD PSSAKSPQAS SMTSKQRMRW TPELHEAFVD AINQLGGSER 180 ATPKAVLKLI NSPGLTIYHV KSHLQKYRTA RYKPEISIDT EKPPLKTLKT IEDIKSLDLK 240 TSIEITEALR LQMEVQKKLH EQLEVQRTLQ LQIEEQGRYL QMMIEKQQQK MQEKKIGSSS 300 GTSSMPEADT SSAPSPNLSQ ASVTERLQSG GSSTLDQSGY PSGATKKRVR ED*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MNNPVPCQVF PLASGGTSSG YCNGTYVSAQ ERSSSQTRQS VETQSLPVTN QPQEQRDMSW  60
PEDQLQGFFD FPPQGESSSR AKSEWPDWAN QMISVDDGLE PNWSEILGDP NVLNQDSKIP  120
APSRDVARQE IVVSTQNQVD PSSAKSPQAS SMTSKQRMRW TPELHEAFVD AINQLGGSER  180
ATPKAVLKLI NSPGLTIYHV KSHLQKYRTA RYKPEISIDT EKPPLKTLKT IEDIKSLDLK  240
TSIEITEALR LQMEVQKKLH EQLEVQRTLQ LQIEEQGRYL QMMIEKQQQK MQEKKIGSSS  300
GTSSMPEADT SSAPSPNLSQ ASVTERLQSG GSSTLDQSGY PSGATKKRVR ED*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-27	155	213	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-27	155	213	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-27	155	213	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-27	155	213	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-27	155	213	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-27	155	213	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-27	155	213	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-27	155	213	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00092876001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009123992.1	0.0	PREDICTED: myb family transcription factor PHL13 isoform X2
Refseq	XP_009123993.1	0.0	PREDICTED: myb family transcription factor PHL13 isoform X2
Refseq	XP_009123994.1	0.0	PREDICTED: myb family transcription factor PHL13 isoform X2
Swissprot	F4J3P7	1e-170	PHLD_ARATH; Myb family transcription factor PHL13
TrEMBL	A0A078IIW8	0.0	A0A078IIW8_BRANA; BnaA05g33010D protein
STRING	Bra040196.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM856	27	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04450.2	1e-162	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]