PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00092927001

Common Name

GSBRNA2T00092927001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 351aa MW: 38805.6 Da PI: 4.7297

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00092927001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.9	2.4e-10	280	320	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq GSBRNA2T00092927001 280 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 320 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.85	270	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.89E-14	272	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.8E-12	275	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.1E-11	276	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.41E-12	279	324	No hit	No description
Pfam	PF00010	1.3E-7	280	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0016049	Biological Process	cell growth
GO:0048766	Biological Process	root hair initiation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MEAMGEWSNN LGGMYTYATE EADFMNQLLA SYDHPGTGPA SGITGGDHHG LYWSLGSHHN 60 HLTLMPEASS FCFSGESSSY SVGNSGYYAV VPPAAEENNN VPMDFGLEDA TINTNSYLVG 120 EETSECDVEK YSSGKTLFPL ETVVENHNEE ESILQSEISV TTTDHHQKYL TGSKKRSRAT 180 SADKNKRTKV SKRGQKNIEM SDDTNNGEED EGEKVKKRKS GTMMSRQNSS TTFCFEEESQ 240 CPSQDDGGEE EEDASKALNL NGKTRASRGA ATDPQSLYAR KRRERINERL RILQNLVPNG 300 TKVDISTMLE EAVHYVKFLQ LQIKLLSSDD LWMYAPIAFN GMDIGLNSPR *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MEAMGEWSNN LGGMYTYATE EADFMNQLLA SYDHPGTGPA SGITGGDHHG LYWSLGSHHN  60
HLTLMPEASS FCFSGESSSY SVGNSGYYAV VPPAAEENNN VPMDFGLEDA TINTNSYLVG  120
EETSECDVEK YSSGKTLFPL ETVVENHNEE ESILQSEISV TTTDHHQKYL TGSKKRSRAT  180
SADKNKRTKV SKRGQKNIEM SDDTNNGEED EGEKVKKRKS GTMMSRQNSS TTFCFEEESQ  240
CPSQDDGGEE EEDASKALNL NGKTRASRGA ATDPQSLYAR KRRERINERL RILQNLVPNG  300
TKVDISTMLE EAVHYVKFLQ LQIKLLSSDD LWMYAPIAFN GMDIGLNSPR *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Roots. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00092927001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009138221.1	0.0	PREDICTED: transcription factor bHLH85-like
Swissprot	Q84WK0	0.0	BH085_ARATH; Transcription factor bHLH85
TrEMBL	A0A078IIZ3	0.0	A0A078IIZ3_BRANA; BnaA03g50680D protein
STRING	Bra036969.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2834	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33880.1	1e-175	ROOT HAIR DEFECTIVE 6-LIKE 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Rymen B, et al. ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator. Plant Physiol., 2017. 173(3): p. 1750-1762 [PMID:28167701] Han H, et al. Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution. Planta, 2017. 246(5): p. 1019-1028 [PMID:28770336]