PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00092962001

Common Name

GSBRNA2T00092962001, LOC106398510

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HSF

Protein Properties

Length: 165aa MW: 18891.9 Da PI: 10.3068

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00092962001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	57.5	3.8e-18	9	101	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX.XXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks.Fkkgk 90 F +ye+++d++l+++isws++++sfv++d++e+ +k+L+++F+ ++++ F+ L+ gF +++ +e+ eF h++ F +gk GSBRNA2T00092962001 9 FYAGVYEVVDDPSLDSIISWSKSNKSFVIWDPKELVEKILSRFFR-NKLSQFISDLESHGFVRIEGSEH--------LEFGHEQyFVRGK 89 77889*************************************8.67999*********99996........69989 PP XXXXXXXXXXXX CS HSF_DNA-bind 91 kellekikrkks 102 el+ k++rk GSBRNA2T00092962001 90 PELMIKLRRKVA 101 *******976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	2.2E-24	5	99	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	7.82E-19	6	99	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	2.8E-20	6	99	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.0E-17	9	99	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.9E-5	9	32	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.9E-5	59	71	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MPWMGMSQFY AGVYEVVDDP SLDSIISWSK SNKSFVIWDP KELVEKILSR FFRNKLSQFI 60 SDLESHGFVR IEGSEHLEFG HEQYFVRGKP ELMIKLRRKV ASARVKKDIK AAKEAEKNGS 120 VGDQPPIRKM SLKDALIRFD QIMRPSKKSS KKAKAKTPLE TIDE*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.19089	2e-62	flower\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00092962001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013694504.1	1e-117	heat stress transcription factor A-4a
TrEMBL	A0A078IK12	1e-115	A0A078IK12_BRANA; BnaA01g35560D protein
TrEMBL	A0A3P5ZAK5	1e-115	A0A3P5ZAK5_BRACM; Uncharacterized protein
STRING	Bra030021.1-P	1e-115	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5067	14	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77570.1	5e-24	Winged helix-turn-helix transcription repressor DNA-binding

Link Out ? help Back to Top
Entrez Gene	106398510

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]