PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00093202001
Common NameGSBRNA2T00093202001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 812aa    MW: 90233.4 Da    PI: 7.0938
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00093202001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.31.5e-19157213157
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                          +++ +++t+ q++e+e++F+++++p+ ++r++L+++lgL+  qVk+WFqN+R+++k+
  GSBRNA2T00093202001 157 KKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELGLEPLQVKFWFQNKRTQMKN 213
                          688999************************************************995 PP
2START209.21.6e-653445582206
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                          la +a++el+++ +++ep+W++++   +++e+ ++f+++ +     +++ea+r+s+vv+m++++ ve+l+d++ qW+  +a    +a  l
  GSBRNA2T00093202001 344 LAVAAMEELMRMTQVDEPLWKSLV--VDEEEYARTFPRGIGpkpagFRTEASRESVVVIMNHVNIVEILMDVN-QWSVVFAgmvsRAVSL 430
                          6789********************..************999********************************.**********9999** PP

                          EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEE CS
                START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvt 165
                          +v+s+g      galq+m+ae+q+++plvp R+ +f+Ry++q+ +g+w++vd+S+ds q++p     vR++++ Sg+li++++ng+skvt
  GSBRNA2T00093202001 431 AVLSTGvagnynGALQVMSAEFQVPTPLVPtRETYFARYCKQQADGSWAVVDISLDSLQPNPP----VRCRRRASGCLIQEMPNGYSKVT 516
                          **************************************************************8....*********************** PP

                          EEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 166 wvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                          wvehv++++r   h l++++v++g+a+gak+wva l+rqce+
  GSBRNA2T00093202001 517 WVEHVEVDDRGGvHDLYKHMVSTGHAFGAKRWVAILDRQCER 558
                          **********988***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-21135212IPR009057Homeodomain-like
SuperFamilySSF466895.01E-19149220IPR009057Homeodomain-like
PROSITE profilePS5007116.471154214IPR001356Homeobox domain
SMARTSM003891.6E-18155218IPR001356Homeobox domain
CDDcd000861.84E-18157215No hitNo description
PfamPF000463.7E-17157212IPR001356Homeobox domain
PROSITE patternPS000270189212IPR017970Homeobox, conserved site
PROSITE profilePS5084841.658334561IPR002913START domain
SuperFamilySSF559618.25E-32335560No hitNo description
CDDcd088751.80E-118338557No hitNo description
SMARTSM002343.5E-59343558IPR002913START domain
PfamPF018522.5E-58344558IPR002913START domain
Gene3DG3DSA:3.30.530.201.2E-4439522IPR023393START-like domain
SuperFamilySSF559611.23E-26577803No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    Send to blast
MFSLALYKHF FFFLQDLHLA FKLFAKKPPD QYKTISGFPT NKAQTTHRYA PLSPFRASPR  60
LPNNLLRCMS EDNTRKKVKG LAFNFKFKKK MFEPNMFLAA MNNEDSNNHN YNHEDNNNNN  120
ERFLRDEEFD SANTKSGSEN QEGGSGNDQD NHHPNKKKRY HRHTQLQIQE MEAFFKECPH  180
PDDKQRKQLS RELGLEPLQV KFWFQNKRTQ MKNHHERHEN SHLRAENEKL RGDNIRYREA  240
LANASCPNCG GPTVIGEMSF DEHQLRLENA RLREEIDRIS AIAAKYVGKP VSSYPLMSPP  300
PLPPRPLELA MGNFGGDVYG NNPTDLFKSI TAPTESDKPL IIDLAVAAME ELMRMTQVDE  360
PLWKSLVVDE EEYARTFPRG IGPKPAGFRT EASRESVVVI MNHVNIVEIL MDVNQWSVVF  420
AGMVSRAVSL AVLSTGVAGN YNGALQVMSA EFQVPTPLVP TRETYFARYC KQQADGSWAV  480
VDISLDSLQP NPPVRCRRRA SGCLIQEMPN GYSKVTWVEH VEVDDRGGVH DLYKHMVSTG  540
HAFGAKRWVA ILDRQCERLA SVMATNISPG EVGVITNQEG RRSMLKLAER MVISFCAGVS  600
ASTAHTWTTL SGTGAEDVRV MTRKSVDDPG RPPGIVLSAA TSFWIPVPPK RVFDFLRDEN  660
SRNEWDILSN GGVVQEMAHI ANGRDTGNCV SLLRVNSANS SQSNMLILQE SCTDPTASFV  720
IYAPVDIVAM NIVLNGGDPD YVALLPSGFA ILPDGNANGG GEGGSLLTVA FQILVDSVPT  780
AKLSLGSVAT VNNLIACTVE RIKAAMSCET A*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.99871e-124seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00093202001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3167760.0AK316776.1 Arabidopsis thaliana AT1G05230 mRNA, complete cds, clone: RAFL09-78-H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013696832.10.0homeobox-leucine zipper protein HDG2-like isoform X3
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A078IF690.0A0A078IF69_BRANA; BnaC05g03270D protein
TrEMBLA0A3P6EP360.0A0A3P6EP36_BRAOL; Uncharacterized protein
STRINGBo5g005350.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]