PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00093246001
Common NameGSBRNA2T00093246001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 371aa    MW: 40975.8 Da    PI: 9.1079
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00093246001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.37.4e-1719109273
             trihelix   2 WtkqevlaLiearr................emeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykki 64 
                          Wt +e+++Liea++                e        +            ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk+
  GSBRNA2T00093246001  19 WTLNETMVLIEAKKmdderrmrrfiglpaaE--------QshdsrsssgnkPAELRWKWIEDFCWRKGCMRSQNQCNDKWDNLMRDYKKV 100
                          **************54444444444444441........0344444444448899*********************************** PP

             trihelix  65 kegekkrts 73 
                          +e e++r +
  GSBRNA2T00093246001 101 REYERRRVE 109
                          *****9843 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.5511194IPR017877Myb-like domain
PfamPF138372.6E-1218109No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MADKSGGLAM MREYRKGNWT LNETMVLIEA KKMDDERRMR RFIGLPAAEQ SHDSRSSSGN  60
KPAELRWKWI EDFCWRKGCM RSQNQCNDKW DNLMRDYKKV REYERRRVES SFATESSSSA  120
AAETGTYWTM EKSERKERNL PSNMSPQTYQ ALFDVVESKT HPSSTAATNV TAAVAAAAAS  180
GNGSGGLGFV QKHQMNQPHV LLPLQPPPPP PLPPSQALQP RPLLLSPPPP PSFHAQPILP  240
TKDTSSDSDT SEHPDTSPAK RRKTIPTTTA GPSGAGRGNA ETEEGETVVA AAFSRSASVI  300
ANAIRESEER QDRRHKEVMS LEERRLMIEE SNVQINREGM GLVEAINKLA NSIFALASSR  360
HNNQHQGGPS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00093246001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894440.0AC189444.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB070J23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013720762.10.0uncharacterized protein LOC106424542
TrEMBLA0A078IHV60.0A0A078IHV6_BRANA; BnaC05g25240D protein
STRINGBo5g065920.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.19e-68Trihelix family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]