PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00093610001

Common Name

GSBRNA2T00093610001, LOC106440838

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 219aa MW: 24057.2 Da PI: 7.1291

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00093610001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.9	2.1e-09	43	92	2	53
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53 + h +Er+RR+++ + f+ Lr++lP ++K +e + Av++Ik+ GSBRNA2T00093610001 43 KLLHRDIERQRRQEMATLFASLRDHLPLqY---IKGKRAVSEHVGGAVNFIKD 92 6679**********************66...999999999999999996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.28E-12	38	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.99E-8	39	92	No hit	No description
PROSITE profile	PS50888	11.681	41	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.2E-7	43	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.3E-7	43	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MDPYQNPNPR GYQGHMPFGS AGHGGSGGSD IPQGTVDNKQ KKKLLHRDIE RQRRQEMATL 60 FASLRDHLPL QYIKGKRAVS EHVGGAVNFI KDTETRIKEL SARRDELIRE TCYTSNPDLA 120 RTASELGNSV PASVMVQPCV SGFEVAVSSD SSGPQALPLS RVLEALQELG LEVISSLTTR 180 VNERLIHTIR VEVNSFGCLD FAWLQQKLVE ELIPSTGY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00093610001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013738053.1	1e-161	transcription factor bHLH126
Refseq	XP_018513263.1	1e-161	PREDICTED: transcription factor bHLH126-like isoform X2
Refseq	XP_022547451.1	1e-161	transcription factor bHLH126-like
Swissprot	Q9STJ6	1e-102	BH126_ARATH; Transcription factor bHLH126
TrEMBL	A0A078IIE7	1e-161	A0A078IIE7_BRANA; BnaA03g47380D protein
TrEMBL	A0A3P5ZT97	1e-161	A0A3P5ZT97_BRACM; Uncharacterized protein
STRING	Bo7g110290.1	1e-145	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2968	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25410.1	1e-104	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	106440838

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]