PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00093807001

Common Name

GSBRNA2T00093807001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GeBP

Protein Properties

Length: 372aa MW: 40601.7 Da PI: 5.3089

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00093807001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	118.4	4e-37	150	241	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 +fqr+wseeDei++LqGlid++++tg+sp+dd++afy vkksisf+vsk+q+++Ki LK K++++ k +e +fsk+hd+k+f+l GSBRNA2T00093807001 150 YFQRVWSEEDEIAVLQGLIDYRNDTGASPYDDTNAFYLSVKKSISFDVSKTQVIKKIWGLKTKYENNLVK----EELTFSKPHDRKAFDL 235 79******************************************************************....9*********** PP DUF573 92 skkiWg 97 sk +Wg GSBRNA2T00093807001 236 SKFVWG 241 ***8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.4E-31	151	241	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MSGKRFNPLE DPPSASSSDE DDQVKTTSLP GNSSSEDETD DESSKNPSSN KPESAPEKQQ 60 VSNSDSGSDE ETDSDSQTVR VKKNPGSSSD AKSIAGTKDS AVVKNHDSKK VKPLTKKRSL 120 SETDGAAAAA SKEAKKVKSG GSGEEAKKTY FQRVWSEEDE IAVLQGLIDY RNDTGASPYD 180 DTNAFYLSVK KSISFDVSKT QVIKKIWGLK TKYENNLVKE ELTFSKPHDR KAFDLSKFVW 240 GADAAALDSA SKKSSKSSSK KVEPEKQELA SSSSPNGKSC EEEAMTNKGE ASSVVEVDAF 300 DKSVLVKALA RFGVDDLSAQ RGWSRLALED KKRFEEEWKT LQLRELEFYS KKSGFIHEVI 360 TKMAESFPPN P*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MSGKRFNPLE DPPSASSSDE DDQVKTTSLP GNSSSEDETD DESSKNPSSN KPESAPEKQQ  60
VSNSDSGSDE ETDSDSQTVR VKKNPGSSSD AKSIAGTKDS AVVKNHDSKK VKPLTKKRSL  120
SETDGAAAAA SKEAKKVKSG GSGEEAKKTY FQRVWSEEDE IAVLQGLIDY RNDTGASPYD  180
DTNAFYLSVK KSISFDVSKT QVIKKIWGLK TKYENNLVKE ELTFSKPHDR KAFDLSKFVW  240
GADAAALDSA SKKSSKSSSK KVEPEKQELA SSSSPNGKSC EEEAMTNKGE ASSVVEVDAF  300
DKSVLVKALA RFGVDDLSAQ RGWSRLALED KKRFEEEWKT LQLRELEFYS KKSGFIHEVI  360
TKMAESFPPN P*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00093807001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013693755.1	0.0	probable transcription factor At1g11510
TrEMBL	A0A078IIM9	0.0	A0A078IIM9_BRANA; BnaCnng18000D protein
STRING	Bo5g014840.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G11510.1	1e-60	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]