PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00094283001
Common NameGSBRNA2T00094283001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 253aa    MW: 27401.6 Da    PI: 6.6874
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00094283001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.3e-1397142454
                          HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          +h e+Er+RR+++N++f  Lr+++P+ +      K++Ka+ L  Av YI++L
  GSBRNA2T00094283001  97 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAVSYINEL 142
                          799***********************66......***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-1993162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.32693142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.73E-1496147No hitNo description
Gene3DG3DSA:4.10.280.102.7E-1897156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-1197142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-1699148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MSTSTWIPPE APSREDFKFL PLQQSSSSHR LLPPAQMQID FSGASSRPSD NNSDGGGGGG  60
GGADWADLVG GADESGGDNR PRKRGRRPAN GRAEALNHVE AERQRREKLN QRFYALRSVV  120
PNISKMDKAS LLGDAVSYIN ELYAKLKVME AEREKLGYSS NPLICLEPPA VNVQTAGEDV  180
AVTVNCALDS HPASRIFHAF EEAKVEVINS KLEVPQDVVL HTFVIKSEEV TKEKLVSALS  240
REQSSSRTSS GR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-2891156265Transcription factor MYC2
5gnj_B3e-2891156265Transcription factor MYC2
5gnj_E3e-2891156265Transcription factor MYC2
5gnj_F3e-2891156265Transcription factor MYC2
5gnj_G3e-2891156265Transcription factor MYC2
5gnj_I3e-2891156265Transcription factor MYC2
5gnj_M3e-2891156265Transcription factor MYC2
5gnj_N3e-2891156265Transcription factor MYC2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.132010.0microspore
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00094283001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013698166.10.0transcription factor bHLH13-like
SwissprotQ9LNJ51e-129BH013_ARATH; Transcription factor bHLH13
TrEMBLA0A078JR000.0A0A078JR00_BRANA; BnaCnng66320D protein
STRINGBo5g002590.11e-165(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-113bHLH family protein
Publications ? help Back to Top
  1. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  2. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]