PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00094464001
Common NameGSBRNA2T00094464001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 341aa    MW: 38399.1 Da    PI: 5.3276
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00094464001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.31.8e-1034120489
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-...TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvlt...kGWkeFvkangLkegDfvvFkldgrse 89 
                          ++ + +++++gr  lp +f++ +++++    +++l  e+g ++++ l+ +k++g+ ++l      W++F+ an++++ ++++++l++++e
  GSBRNA2T00094464001  34 ITPSLYSFEKGRQQLPDTFTKVNKLEPG---EIILLAEDGVTYTMMLKLKKNGGSrCYLHiksPTWEKFCLANEVRAEETFILELTEKRE 120
                          55567999************88887754...6***************99777777755555559********************875433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-927124IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-728123IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.7E-631130IPR003340B3 DNA binding domain
CDDcd100171.26E-831123No hitNo description
PfamPF023623.5E-931121IPR003340B3 DNA binding domain
PROSITE profilePS508638.79731129IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MDRLLQSMKE PKFQLCTCRE RKKKEQLSSR FVEITPSLYS FEKGRQQLPD TFTKVNKLEP  60
GEIILLAEDG VTYTMMLKLK KNGGSRCYLH IKSPTWEKFC LANEVRAEET FILELTEKRE  120
LKFFSKYDNE TERTGSLNEK EPNLVQQVLT SQRHQTSEFR STCPEEEHEH SGCSDVLPRA  180
IEEEECVALT PYPTVSDETK KQHNIQDIHI RELTYITTQP GVLEADESYT TPFACQIQQL  240
HFLESSGNTS TASQDSSKGR TRAKYLKERF VSTPTSAEPH IAGQGAVSDQ DECSLPSPLV  300
GTNQADLSSA NYCSRNWSNL IMPLVHEGFV ESSAGVAAPG *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00094464001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018509881.10.0PREDICTED: uncharacterized protein LOC103839934
TrEMBLA0A078FUZ40.0A0A078FUZ4_BRANA; BnaA09g20100D protein
TrEMBLA0A3P5Y0A40.0A0A3P5Y0A4_BRACM; Uncharacterized protein
STRINGBra029538.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.14e-22B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]