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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | GSBRNA2T00094717001 | ||||||||
| Common Name | GSBRNA2T00094717001, LOC106366064 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family | MIKC_MADS | ||||||||
| Protein Properties | Length: 242aa MW: 27496.4 Da PI: 9.8406 | ||||||||
| Description | MIKC_MADS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SRF-TF | 96.4 | 1.2e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+++fss+gkl+eys+
GSBRNA2T00094717001 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVVFSSKGKLFEYST 59
79***********************************************96 PP
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| 2 | K-box | 104.7 | 1.2e-34 | 78 | 174 | 4 | 100 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93
++ + + +++e++ e+akLk+++e L++++R+++GedL+sLs+keLq+Le+qL+ ++k+iRs+Kn+ ++e+i+ lqkk k+lq++n++
GSBRNA2T00094717001 78 KQLVGRDISQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSIKELQSLEHQLDAAIKSIRSRKNQAMFESISALQKKDKALQDHNNT 167
56666778899******************************************************************************* PP
K-box 94 Lrkklee 100
L kk++e
GSBRNA2T00094717001 168 LLKKIKE 174
****987 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50066 | 32.52 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 3.3E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 3.05E-40 | 2 | 79 | No hit | No description |
| SuperFamily | SSF55455 | 3.53E-33 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.5E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.3E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.5E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.5E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 1.3E-28 | 86 | 172 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 15.879 | 88 | 178 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 242 aa Download sequence Send to blast |
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALVVFSS KGKLFEYSTD 60 SSMERILERY DRYLYSDKQL VGRDISQSEN WVLEHAKLKA RVEVLEKNKR NFMGEDLDSL 120 SIKELQSLEH QLDAAIKSIR SRKNQAMFES ISALQKKDKA LQDHNNTLLK KIKEKEKEKN 180 TGQQEGQLIQ CSNNSSVLQP QYCVTASRDG LVERVVGENG GASSLIEPNS LLPAWMLRSN 240 E* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5f28_A | 3e-22 | 1 | 90 | 1 | 89 | MEF2C |
| 5f28_B | 3e-22 | 1 | 90 | 1 | 89 | MEF2C |
| 5f28_C | 3e-22 | 1 | 90 | 1 | 89 | MEF2C |
| 5f28_D | 3e-22 | 1 | 90 | 1 | 89 | MEF2C |
| Search in ModeBase | ||||||
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Bna.23911 | 0.0 | vegetative meristem | ||||
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | TISSUE SPECIFICITY: Vascular tissue of cauline leaves, floral shoot apex and valves of carpels and fruits. {ECO:0000269|PubMed:9502732}. | |||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor that promotes early floral meristem identity in synergy with APETALA1 and CAULIFLOWER. Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:28586421). Seems to be partially redundant to the function of APETALA1 and CAULIFLOWER in the up-regulation of LEAFY. Is also required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:28586421). Probably not required for fruit elongation but instead is required to prevent ectopic activity of IND. Represses SAUR10 expression in stems and inflorescence branches (PubMed:28586421). {ECO:0000269|PubMed:10648231, ECO:0000269|PubMed:15035986, ECO:0000269|PubMed:28586421, ECO:0000269|PubMed:9502732}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | GSBRNA2T00094717001 |
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Dramatically up-regulated upon the transition from vegetative to reproductive development. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AJ505844 | 0.0 | AJ505844.1 Brassica oleracea var. botrytis mRNA for MADS-box protein FUL-d. | |||
| GenBank | DQ414534 | 0.0 | DQ414534.1 Brassica napus Ful-like protein (Ful) mRNA, complete cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009111965.1 | 1e-177 | PREDICTED: agamous-like MADS-box protein AGL8 isoform X2 | ||||
| Refseq | XP_013661070.1 | 1e-177 | agamous-like MADS-box protein AGL8 | ||||
| Swissprot | Q38876 | 1e-163 | AGL8_ARATH; Agamous-like MADS-box protein AGL8 | ||||
| TrEMBL | A0A078FVN6 | 1e-175 | A0A078FVN6_BRANA; BnaA09g05500D protein | ||||
| TrEMBL | A0A397XRH3 | 1e-175 | A0A397XRH3_BRACM; Uncharacterized protein | ||||
| TrEMBL | M4F4F2 | 1e-175 | M4F4F2_BRARP; Uncharacterized protein | ||||
| STRING | Bra035952.1-P | 1e-176 | (Brassica rapa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM792 | 25 | 110 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G60910.1 | 1e-159 | AGAMOUS-like 8 | ||||
| Link Out ? help Back to Top | |
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| Entrez Gene | 106366064 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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