PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00094994001

Common Name

GSBRNA2T00094994001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 111aa MW: 12746.6 Da PI: 8.5067

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00094994001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.6	0.00012	69	89	11	30
HHHHHHHHHHHHHHCTSCC.C CS HLH 11 rRRdriNsafeeLrellPk.a 30 RR+ri +++ L+el+P+ + GSBRNA2T00094994001 69 LRRERIAERIMALQELVPTvN 89 6*****************944 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	8.7E-4	68	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
MKRGCYQGDR HGNCDVGDFH LEEDQSPQRH PLRRHDRGSS SFALLDMIED VVSSYKAPIF 60 LGPASPQQLR RERIAERIMA LQELVPTVNK VSIFHLLYGS ARCWIQILWR *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.22071	1e-59	flower

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00094994001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013619040.1	2e-72	PREDICTED: uncharacterized protein LOC106325541 isoform X1
TrEMBL	A0A078FVS6	1e-76	A0A078FVS6_BRANA; BnaA08g03900D protein
TrEMBL	A0A3P6E5I7	1e-76	A0A3P6E5I7_BRAOL; Uncharacterized protein
STRING	Bo2g011720.1	8e-72	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM26518	2	2

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]