PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00095130001
Common NameGSBRNA2T00095130001, LOC106422529
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 331aa    MW: 37697.5 Da    PI: 8.2628
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00095130001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.66.5e-36351272103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y+++ed+++++++sw ++ ++f+v+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k
  GSBRNA2T00095130001  35 FLTKTYQLVEDPATDHVVSWGDDDTTFIVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFRRGEK 115
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++i+r+k++
  GSBRNA2T00095130001 116 HLLCEIHRRKTS 127
                          *********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.8E-3827119IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.9E-6031124IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.8E-3532124IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.3E-3235124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-193558IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-197385IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407498IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-198698IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MATMLENSYG YDNGGTGERI QLMVEGQGKA VPAPFLTKTY QLVEDPATDH VVSWGDDDTT  60
FIVWRPPEFA RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF RRGEKHLLCE  120
IHRRKTSQMI PNQHSPFITH HPPPQIPFSG GASFFPLPPR VDAATAAMDD HYWCESPSPR  180
PRLVPTTLDP QVAVLTEDNE RLRRTNTVLM SELAHMKKLY NDIIYFVQNH VKPVAPSNSF  240
LQKQQQPPPL IDYYNNATVP NHSPPTSQSS ITLLEDDTNH ESFTRKTKLF GVSLASSKKR  300
SHHFSDQSSK TRLVLDKSDL GLNLMTASTR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-223112717123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297301KKRSH
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00095130001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013718774.10.0heat stress transcription factor B-4
SwissprotQ9C6350.0HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A078FXM00.0A0A078FXM0_BRANA; BnaC06g00310D protein
TrEMBLA0A3P6H1V60.0A0A3P6H1V6_BRAOL; Uncharacterized protein
STRINGBo6g008100.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29002866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.10.0heat shock transcription factor B4
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]