PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00095484001

Common Name

GSBRNA2T00095484001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 155aa MW: 17937.8 Da PI: 9.6437

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00095484001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	31.6	4.8e-10	18	129	11	128
NAM 11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 de ++++yLk+ +++ +++ ++ d+++ +P+ + ++ f + + ++++ gk + g W++ dk ++++ +g+l GSBRNA2T00095484001 18 DELILSRYLKPMIDEGASWPQHFDEDSDVFNKNPSAIS--------NTLFVIVKPRTETCGKTDG--CEYGSWRTMAGDKLIKNEeTGKL 97 5556789999999999855534456679****9996........3456666666666554443..468********99878889 PP NAM 100 vglkktLvfy.kgrapkge..ktdWvmheyrl 128 g kk+L f k+++ +g+ k +Wvm+eyrl GSBRNA2T00095484001 98 LGFKKILKFClKKTKTRGReyKRSWVMEEYRL 129 *****97344444444499*****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	18.876	8	147	IPR003441	NAC domain
Pfam	PF02365	8.3E-8	18	129	IPR003441	NAC domain
SuperFamily	SSF101941	4.84E-20	18	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MASAEYLRIR NELMGAGDEL ILSRYLKPMI DEGASWPQHF DEDSDVFNKN PSAISNTLFV 60 IVKPRTETCG KTDGCEYGSW RTMAGDKLIK NEETGKLLGF KKILKFCLKK TKTRGREYKR 120 SWVMEEYRLA SKWNPKQDHV ICKIRLLWVH TCRT*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.11116	1e-132	flower

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00095484001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013665177.1	1e-104	uncharacterized protein LOC106369586
TrEMBL	A0A078FW37	1e-112	A0A078FW37_BRANA; BnaA10g10080D protein
STRING	Bo9g123430.1	4e-83	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3704	14	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G60340.1	1e-49	NAC family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]