PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00095517001
Common NameGSBRNA2T00095517001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 471aa    MW: 52237.7 Da    PI: 5.391
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00095517001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.00117294123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         + C  Cgk+F++   L  H r H
  GSBRNA2T00095517001 72 HICCECGKRFKSGKALGGHKRIH 94
                         68*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.04E-66897No hitNo description
Gene3DG3DSA:3.30.160.609.4E-56994IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.977299IPR007087Zinc finger, C2H2
PfamPF139121.5E-77294IPR007087Zinc finger, C2H2
SMARTSM003550.197294IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SMARTSM003552.9124146IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.954124146IPR007087Zinc finger, C2H2
PfamPF139120.0056126147IPR007087Zinc finger, C2H2
PROSITE patternPS000280126146IPR007087Zinc finger, C2H2
SuperFamilySSF576673.08E-7315338No hitNo description
PROSITE profilePS501579.411316343IPR007087Zinc finger, C2H2
PfamPF139124.5E-10316340IPR007087Zinc finger, C2H2
SMARTSM003550.55316338IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280318338IPR007087Zinc finger, C2H2
SuperFamilySSF576673.08E-7380407No hitNo description
PfamPF139121.2E-11385408IPR007087Zinc finger, C2H2
SMARTSM003550.14385407IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.494385407IPR007087Zinc finger, C2H2
PROSITE patternPS000280387407IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MDQCRFSHGR PRFGSIKFKV PNSSQPFISQ KRKEMEEEDQ AEEEAKSIGF REEEECEDDD  60
GAKSIEEEEK KHICCECGKR FKSGKALGGH KRIHVLEARK FSMVRPKMVA GVVGRSDERD  120
DFEVDCCVCH KKFTSMKALY GHMRFHPDRG WKGVLPPHHH HPLDHDGGEF ISSDYDDDDD  180
DDDDDGDHED DDDDENSELW DNHWELDNVV DLKDSIKGWA VTGKRGRRSA LKDPPPEDVD  240
AKDLLFLATT AEAVDLDAAE TCDSRSVEEM MKKRKKKRKR LSEMEKESTS SHDHHQLEVG  300
AASAAEEGGG GAREKHVCVT CNKSFASYQA LGGHRASHNK VKISENHQAR ANSEALLLGT  360
EAMMTGLASA QGPNTSLSIG NKGDHVCNIC QKSFTTGQAL GGHKRCHWPG PTSNEAATAP  420
VPASNESATT APTPLVACSS SQVTETVQEE KKLKRKFLEF DLNELPPNEE *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271275KKRKK
2271279KKRKKKRKR
3273279RKKKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00095517001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022566859.10.0zinc finger protein ZAT4-like
TrEMBLA0A078FXC90.0A0A078FXC9_BRANA; BnaA10g10360D protein
STRINGBo9g123640.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-140C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]