PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00095755001

Common Name

GSBRNA2T00095755001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ZF-HD

Protein Properties

Length: 93aa MW: 9710.93 Da PI: 8.2199

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00095755001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	36.1	1.5e-11	54	88	10	43
ZF-HD_dimer 10 lkNhAaslGghavDGCgEfmpsegee.gtaaalkC 43 l+N Aa++Ggha+D C Efm s++ + +++++lkC GSBRNA2T00095755001 54 LQNRAAAIGGHALDVCSEFMLSPTFTsSDPTSLKC 88 79*******************999899**** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51523	11.532	50	92	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	4.8E-7	54	88	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-7	54	88	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
MLEVGAMDMT PKYPAKYPTN PKLRPRSNQL NQSPSATESS NAATTSTTTQ PPSLQNRAAA 60 IGGHALDVCS EFMLSPTFTS SDPTSLKCGL PP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00095755001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013623869.1	3e-56	PREDICTED: zinc-finger homeodomain protein 9-like
Refseq	XP_013624556.1	3e-56	PREDICTED: zinc-finger homeodomain protein 9-like
TrEMBL	A0A078FSQ8	7e-60	A0A078FSQ8_BRANA; BnaC03g65280D protein
STRING	Bo3g021250.1	1e-55	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15210.1	2e-11	homeobox protein 30

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]