PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00095779001
Common NameGSBRNA2T00095779001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 418aa    MW: 46298.4 Da    PI: 6.6293
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00095779001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS423.12.3e-129404171374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lL+++A+++s+++ ++aq++L+ ls ++sp+gd+++Rl++ ft+AL+ r+       ++  ++++++e+ ss++  ++  +++++P+
  GSBRNA2T00095779001  40 LRRLLFTAADFISQSNVSAAQNILSILSSNSSPYGDSTERLVHLFTKALSVRIGL-----SENTATWTANEMASSSTSCYYLWLNQLTPF 124
                          689**************************************************86.....77888899998889999899999******* PP

                 GRAS  91 lkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp......egppslRiTgvgspesgskeeleetgerLakfAee 171
                          ++fshltaNqaIl+a+e++    ++Hi+D+disqGlQWp+L+qaLa+R+       +ppslRiTg+g+    + + l++tg+rL++fA++
  GSBRNA2T00095779001 125 IRFSHLTANQAILDATETNngnGALHILDLDISQGLQWPPLMQALAERSssnpssTPPPSLRITGCGR----DVTVLNRTGDRLTRFANS 210
                          *****************9888799************************97766655699*********....****************** PP

                 GRAS 172 lgvpfefnvlvak..rledl..eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255
                          lg++f+f++lv    +l+ l  +++ L+++   gE++aVn+v+ lhr++++++++     ++L+++ksl+P++v+++e+ea+h+++sFl+
  GSBRNA2T00095779001 211 LGLQFQFHTLVIAeeDLAGLllQIRLLALSAvqGESIAVNCVHFLHRFFNDDGDMIG---HFLSAIKSLNPRIVTMAEREANHGDPSFLT 297
                          *********944312443223366666665556**********************99...****************************** PP

                 GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                          rf+eal++++a+fdslea+lp++s+er ++E++++g ei +vva+e aer++rh+++e W+e++++ GF +vp++++a +qaklllr ++
  GSBRNA2T00095779001 298 RFSEALDHFMAIFDSLEATLPPNSRERLTLEQRWFGMEILDVVAAEAAERKQRHRRFEVWEEMMKRHGFANVPIGSFAFSQAKLLLRLHY 387
                          ****************************************************************************************** PP

                 GRAS 346 .sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                           s+gy+++  ++sl+lgWk+r L+svS+W+
  GSBRNA2T00095779001 388 pSEGYNLQFLNDSLFLGWKNRLLFSVSSWK 417
                          *****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.61614396IPR005202Transcription factor GRAS
PfamPF035148.0E-12740417IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MLASFKSSSS SSEDATENPP PPPPLCLASS SAATSAAHHL RRLLFTAADF ISQSNVSAAQ  60
NILSILSSNS SPYGDSTERL VHLFTKALSV RIGLSENTAT WTANEMASSS TSCYYLWLNQ  120
LTPFIRFSHL TANQAILDAT ETNNGNGALH ILDLDISQGL QWPPLMQALA ERSSSNPSST  180
PPPSLRITGC GRDVTVLNRT GDRLTRFANS LGLQFQFHTL VIAEEDLAGL LLQIRLLALS  240
AVQGESIAVN CVHFLHRFFN DDGDMIGHFL SAIKSLNPRI VTMAEREANH GDPSFLTRFS  300
EALDHFMAIF DSLEATLPPN SRERLTLEQR WFGMEILDVV AAEAAERKQR HRRFEVWEEM  360
MKRHGFANVP IGSFAFSQAK LLLRLHYPSE GYNLQFLNDS LFLGWKNRLL FSVSSWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-624741626378Protein SCARECROW
5b3h_A6e-624741625377Protein SCARECROW
5b3h_D6e-624741625377Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the axils of leaf primordia and leaves from P1 to P20/22. In the axil of P1, expressed in 3 to 5 cell layers including the L1 to L3 layers of the shoot apical meristem (SAM). Then, extends from 1 or 2 cell layers in the adaxial-abaxial dimension. From P5 to P22, expression is restricted to a 1 to 2 cell-layer domain located within primordium. In the axils of older leaf primordia, expression decreases until it is no longer detectable in the axils of primordia older than P20/P22. {ECO:0000269|PubMed:12730136}.
UniprotTISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00095779001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ3242330.0HQ324233.1 Brassica napus cultivar Hua shuang No. 5 transcription factor LAS (LAS) gene, promoter region, 5' UTR and complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013646262.20.0scarecrow-like protein 18
SwissprotQ9ZWC50.0SCL18_ARATH; Scarecrow-like protein 18
TrEMBLA0A078ILY50.0A0A078ILY5_BRANA; BnaA06g00290D protein
STRINGBo6g034670.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM113292733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.10.0GRAS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]