PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00095845001
Common NameGSBRNA2T00095845001, LOC106397118
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 289aa    MW: 31580.1 Da    PI: 6.5838
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00095845001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.21.9e-17210245134
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C++Cgt++  Tp++Rrgp+g++tLCnaCGl+++ kg
  GSBRNA2T00095845001 210 CRHCGTSEnsTPMMRRGPEGPRTLCNACGLMWANKG 245
                          *********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.41166101IPR010399Tify domain
SMARTSM009793.0E-1066101IPR010399Tify domain
PfamPF062002.8E-1171100IPR010399Tify domain
PROSITE profilePS5101713.066134176IPR010402CCT domain
PfamPF062031.5E-15134176IPR010402CCT domain
PROSITE profilePS501149.895204260IPR000679Zinc finger, GATA-type
SMARTSM004012.4E-10204257IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.43E-13207269No hitNo description
Gene3DG3DSA:3.30.50.101.5E-15209251IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440210237IPR000679Zinc finger, GATA-type
CDDcd002023.62E-15210263No hitNo description
PfamPF003202.5E-15210245IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDDDGLHGNN GGMHSGGDEL PMHVQYEHHG MMDEHADDGM NGGLETDIPS HLGNPSDHRG  60
EVVDRGGENG DQLTLSYQGQ VYVFDHVLPE KVQAVLLLLG GREVPQTLPT TVGSPHQNNR  120
GLSGTPQRFS APQRQASLLR FREKRKGRNF DKTIRYTVRK EVALRMQRKK GQFTSAKSSN  180
EESALTGPDW GSGQSWALEG CETQKPEALC RHCGTSENST PMMRRGPEGP RTLCNACGLM  240
WANKGALRDL SKAPPPQITR NLPTNKNDES NLEADQMMVV AGDISNSN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.76370.0flower| root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00095845001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638694.10.0PREDICTED: GATA transcription factor 24-like isoform X2
RefseqXP_013693130.10.0GATA transcription factor 24 isoform X2
SwissprotQ8GXL71e-167GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A078IM270.0A0A078IM27_BRANA; BnaC05g30820D protein
TrEMBLA0A0D3CHP90.0A0A0D3CHP9_BRAOL; Uncharacterized protein
STRINGBo5g103560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-171ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]