PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00095889001
Common NameGSBRNA2T00095889001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 208aa    MW: 22668 Da    PI: 6.5819
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00095889001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.8e-183585155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++ykGVr ++ +g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  GSBRNA2T00095889001 35 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 85
                         59*****998.**********9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.24E-183595No hitNo description
SuperFamilySSF541716.08E-183694IPR016177DNA-binding domain
SMARTSM003805.7E-3336100IPR001471AP2/ERF domain
PROSITE profilePS5103221.8783694IPR001471AP2/ERF domain
PfamPF008471.6E-113685IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-293695IPR001471AP2/ERF domain
PRINTSPR003674.6E-93748IPR001471AP2/ERF domain
PRINTSPR003674.6E-95975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MVKALQNRTK RMSSPSSSSS SLSTSSSTSK SNLAKKYKGV RMRSWGSWVS EIRAPNQKTR  60
IWLGSYSTAE AAARAYDAAL LCLKGSSASN LNFPEISSSL YNTNNGDNKN NINMSPKYIQ  120
RVAAAAANAD PSSSSVSTSS PLLSSSPSED LYDVVSMSQY DQQAVSLSES SWYNCFDGDD  180
QFMLPYLTTP LADDFYEEGD IRLWNFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-13361061480Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00095889001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5608391e-120AY560839.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g44830) mRNA, complete cds.
GenBankBT0252701e-120BT025270.1 Arabidopsis thaliana At1g44830 mRNA, complete cds.
GenBankCP0026841e-120CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT12C221e-120AC020576.2 Sequence of BAC T12C22 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009124432.11e-147PREDICTED: ethylene-responsive transcription factor ERF014
RefseqXP_013646171.11e-147ethylene-responsive transcription factor ERF014-like
SwissprotQ9LPE87e-73ERF14_ARATH; Ethylene-responsive transcription factor ERF014
TrEMBLA0A078IL631e-147A0A078IL63_BRANA; BnaA10g27820D protein
STRINGBra040309.1-P1e-137(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144091822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44830.12e-68ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang H,Hong Y,Huang L,Li D,Song F
    Arabidopsis AtERF014 acts as a dual regulator that differentially modulates immunity against Pseudomonas syringae pv. tomato and Botrytis cinerea.
    Sci Rep, 2016. 6: p. 30251
    [PMID:27445230]