PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00095924001
Common NameGSBRNA2T00095924001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 337aa    MW: 38755.3 Da    PI: 6.525
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00095924001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-16127172248
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          g W + Ed  l ++v+++G+++Wk+Ia+++g +R +kqc++rw+++l
  GSBRNA2T00095924001 127 GGWDQSEDINLRKLVELYGTKSWKRIANMLG-TRIGKQCRERWYNHL 172
                          67*****************************.*************97 PP
2Myb_DNA-binding50.35.5e-16178220145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          +++WT+ Ed++lv+a+k +G++ W++Ia  +  gRt++ +k+rw+
  GSBRNA2T00095924001 178 KNAWTEKEDQILVEAHKVFGNK-WAKIALNLC-GRTENAIKNRWN 220
                          689*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.943121176IPR017930Myb domain
SuperFamilySSF466892.64E-26125219IPR009057Homeodomain-like
SMARTSM007177.6E-14125174IPR001005SANT/Myb domain
PfamPF002493.9E-16127172IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-21128179IPR009057Homeodomain-like
CDDcd001671.08E-13129172No hitNo description
SMARTSM007171.1E-15177225IPR001005SANT/Myb domain
PROSITE profilePS5129419.142177227IPR017930Myb domain
PfamPF002492.2E-14178220IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-19180225IPR009057Homeodomain-like
CDDcd001671.38E-11180223No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MDDSFNNFYK NFTRNETGDS LTNDDLAYLQ KNRIKCFNDY LGQSSVNGWS NSSIVTSNSD  60
PNLMSEMPNQ NYDPFSQSLV CTQNFPAFNS LITKIPPKYP FIDIDLEKNK KVATKSKTST  120
EGNFNTGGWD QSEDINLRKL VELYGTKSWK RIANMLGTRI GKQCRERWYN HLRHGIKKNA  180
WTEKEDQILV EAHKVFGNKW AKIALNLCGR TENAIKNRWN ATKRRMHLMR MKKRDKDANP  240
PQNVILARYI SDVTNKNESP NTKETYSTKD DDYENAFNGE MDLSLDATTQ TIEPLASMST  300
TSCYAPEPAT TFSWDDYFTN VCESMDDIEM LMQGWD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-331272258106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00095924001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013745691.20.0transcription factor MYB115-like
TrEMBLA0A078IL780.0A0A078IL78_BRANA; BnaC04g32490D protein
STRINGBo4g140150.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133031427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25230.16e-52myb domain protein 100
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]