PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00095933001
Common NameGSBRNA2T00095933001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 264aa    MW: 30400.2 Da    PI: 7.2911
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00095933001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.1e-175499248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         g+W + Ed  l+++v+++G+++Wk+Ia+++g +R +kqc++rw+++l
  GSBRNA2T00095933001 54 GAWGQSEDTNLKKLVELYGTKNWKRIANMLG-TRIGKQCRERWHNHL 99
                         89*****************************.*************97 PP
2Myb_DNA-binding53.17.4e-17105147145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          + +WT+eEd +lv+a+k +G++ W++Ia ++  gRt++ +k+rw+
  GSBRNA2T00095933001 105 KSAWTEEEDHILVEAHKVFGNK-WAKIALRIC-GRTENAIKNRWN 147
                          579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.32948103IPR017930Myb domain
SMARTSM007171.6E-1452101IPR001005SANT/Myb domain
SuperFamilySSF466891.21E-2752146IPR009057Homeodomain-like
PfamPF002495.3E-175399IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2354105IPR009057Homeodomain-like
CDDcd001676.49E-145599No hitNo description
SMARTSM007171.5E-14104152IPR001005SANT/Myb domain
PROSITE profilePS5129420.04104154IPR017930Myb domain
PfamPF002493.0E-15105147IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-19106152IPR009057Homeodomain-like
CDDcd001673.65E-11107147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MSVMPNQNYN HFGRGFVCTQ NIPAFNSLIT EIPPRYPFID TDLPASTEGN FNTGAWGQSE  60
DTNLKKLVEL YGTKNWKRIA NMLGTRIGKQ CRERWHNHLR HGIKKSAWTE EEDHILVEAH  120
KVFGNKWAKI ALRICGRTEN AIKNRWNGTK RRMHLKRMKK SDKNENSPQN VILARYIRHV  180
TNENESPNTK ETDCTKDDDH ENAFDGEMDL SLDVTRHTTK PLASMSTTSC YVPEPATTFS  240
WDDYFTNICE SMDDIQMLME GLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-35541528106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00095933001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013745691.21e-180transcription factor MYB115-like
TrEMBLA0A3P6BZV60.0A0A3P6BZV6_BRAOL; Uncharacterized protein
STRINGBo4g140210.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133031427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40360.12e-56myb domain protein 115
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]