PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00095935001

Common Name

GSBRNA2T00095935001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB

Protein Properties

Length: 260aa MW: 30157 Da PI: 7.4656

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00095935001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.7	2e-16	51	95	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +W + Ed l ++v+++G+++Wk+Ia+++g +R +kqc++rw+++l GSBRNA2T00095935001 51 AWDQSEDTNLRKLVELYGTKNWKRIANMLG-TRIGKQCRERWHNHL 95 5***************************.***********97 PP
2	Myb_DNA-binding	54.8	2.1e-17	101	143	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eEd++lv+a+k +G++ W++Ia ++ gRt++ +k+rw+ GSBRNA2T00095935001 101 KSAWTEEEDQILVEAHKVFGNK-WAKIALKLC-GRTENAIKNRWN 143 579*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.404	44	95	IPR017930	Myb domain
SMART	SM00717	7.3E-12	48	97	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.03E-27	49	142	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.5E-23	51	102	IPR009057	Homeodomain-like
CDD	cd00167	4.89E-14	51	95	No hit	No description
Pfam	PF00249	1.6E-15	51	95	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	24.224	96	150	IPR017930	Myb domain
SMART	SM00717	2.3E-16	100	148	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-15	101	143	IPR001005	SANT/Myb domain
CDD	cd00167	2.32E-12	103	143	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.5E-20	103	148	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MPNQNYNHFG RSFVCTQNLP ANSLITEIPP RYPFIDIDLP DSTEGNFNTW AWDQSEDTNL 60 RKLVELYGTK NWKRIANMLG TRIGKQCRER WHNHLRHGIK KSAWTEEEDQ ILVEAHKVFG 120 NKWAKIALKL CGRTENAIKN RWNGTKRRMR LMRMKKSDKN ANPLQNAILA RYIRHVTNEN 180 ESPNTKETDC TKDDDRENAF DGEMDLSLDV TTQTTKPLAK MSTTSCYVPE PATTFSWDDY 240 FTNICESMDD IQMLMQGLD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	8e-36	39	148	2	106	B-MYB
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00095935001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013745691.2	1e-176	transcription factor MYB115-like
TrEMBL	A0A3P6CWL8	0.0	A0A3P6CWL8_BRAOL; Uncharacterized protein
STRING	Bo4g140220.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13303	14	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25230.1	4e-53	myb domain protein 100

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]