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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
GSBRNA2T00095944001 |
| Common Name | GSBRNA2T00095944001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
GRAS |
| Protein Properties |
Length: 534aa MW: 58806.5 Da PI: 5.9483 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSBRNA2T00095944001 | genome | Genoscope | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 395.3 | 6.6e-121 | 156 | 526 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90
l+e+Lle A+av++gd++ a ++ l++++s +g+p+qRl ay++e+L+arl +s+ ++y+al+++e + e ++++ +++e++P+
GSBRNA2T00095944001 156 LKEVLLEGARAVADGDFATACGFIDVLEQMVSVSGSPIQRLGAYMAEGLRARLEGSGGNIYRALKCNEPT---GRELMSYMGVLYEICPY 242
5789*****************************************************************9...99999999********* PP
GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
kf+++ aN aIlea++g++r+H+iDf+i qG Q++ L+++La+Rp+gpp lR+Tgv++++s + l +ge+La++A+++gvpfef
GSBRNA2T00095944001 243 WKFAYMSANAAILEATAGDNRIHVIDFQIAQGSQYMFLIHELAKRPGGPPLLRVTGVDDSQSYyaRGGGLTLVGEKLANMAKSCGVPFEF 332
***********************************************************998899999********************** PP
GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
+ + + +++ e+L v+pg a++Vn+ + lh+++desvs+e++rd++L+l+ksl P++v++veqe+++n+++Fl rf+++l+yy+a+f
GSBRNA2T00095944001 333 HD-AIMSGCEVHREHLGVEPGFAVVVNFPFVLHHMPDESVSVENHRDRLLHLIKSLGPRLVTLVEQESNTNTSPFLSRFVQTLDYYTAMF 421
**.788899999****************************************************************************** PP
GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
+s++a pr++++ri+ E+++++r+ivn++ace++er+erhe l+kWr r+++aGF p++ +aa a+ +l+ ++++ y++ ++g+l
GSBRNA2T00095944001 422 ESIDAARPRDEKQRISAEQHCVARDIVNMIACEERERVERHEVLGKWRVRMMMAGFVGWPVGGSAAFAASEMLKGYDKN-YKLGGSEGAL 510
*****************************************************************************66.********** PP
GRAS 359 vlgWkdrpLvsvSaWr 374
+l Wk+rp+ ++SaW+
GSBRNA2T00095944001 511 YLFWKRRPMATCSAWK 526
***************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 534 aa
Download sequence Send
to blast |
MQTSQKHHSA AGLHMLYPQP HCSPQFQMID NNNNNGSSKE SFFTLESSTA SGTTLPSYDS 60
PSSVSITSGR SPFSPQGSHS CISDPHPSPE NVYESPLSAA SSYVYDEAGV KSKIRELEET 120
LLSSDPKVEE YSGFSPAAGK SWNWDELLAL TPQLDLKEVL LEGARAVADG DFATACGFID 180
VLEQMVSVSG SPIQRLGAYM AEGLRARLEG SGGNIYRALK CNEPTGRELM SYMGVLYEIC 240
PYWKFAYMSA NAAILEATAG DNRIHVIDFQ IAQGSQYMFL IHELAKRPGG PPLLRVTGVD 300
DSQSYYARGG GLTLVGEKLA NMAKSCGVPF EFHDAIMSGC EVHREHLGVE PGFAVVVNFP 360
FVLHHMPDES VSVENHRDRL LHLIKSLGPR LVTLVEQESN TNTSPFLSRF VQTLDYYTAM 420
FESIDAARPR DEKQRISAEQ HCVARDIVNM IACEERERVE RHEVLGKWRV RMMMAGFVGW 480
PVGGSAAFAA SEMLKGYDKN YKLGGSEGAL YLFWKRRPMA TCSAWKPNPN QIV*
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: During development, higher expression levels are detected in young rosette leaves, senescing leaves and petals and sepals at flower stage 15. {ECO:0000269|PubMed:16680434}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, shoot apex, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:16680434, ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
