PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00095989001
Common NameGSBRNA2T00095989001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 253aa    MW: 27353.3 Da    PI: 7.4702
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00095989001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00058118140123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ C+++Fs+   L  H  +H
  GSBRNA2T00095989001 118 YECKTCSRTFSSFQALGGHRASH 140
                          99**********99999998887 PP
2zf-C2H213.60.0002159181123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg  F++   L  H+r+H
  GSBRNA2T00095989001 159 HECSICGSEFTSGQALGGHMRRH 181
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.23E-8117181No hitNo description
PfamPF139121.5E-12117142IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.032118145IPR007087Zinc finger, C2H2
SMARTSM003550.13118140IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.4E-4157181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.3E-11158182IPR007087Zinc finger, C2H2
SMARTSM003550.019159181IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.868159186IPR007087Zinc finger, C2H2
PROSITE patternPS000280161181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MMSQDHVGSD QTQIIKGKRT KRQRSSSSTF LVAAAAATTN TSSNSSAGDG GGGRAVSDEY  60
NSAVSSPVTT TDCTEEEEDM AICLIMLARG AALSPDLKNS RKADKTLSSA ENSSFFVYEC  120
KTCSRTFSSF QALGGHRASH KKPREGQKYN FKVKANKVHE CSICGSEFTS GQALGGHMRR  180
HRTATTAVIP VATTEVSRNS TEEETENLSS YIEQRKYLPL DLNLPAPEDD LRESKFQGIV  240
FSTTPALIDC HY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.213121e-170flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00095989001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633836.11e-159PREDICTED: zinc finger protein ZAT5-like
SwissprotQ681X41e-125ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A078JWS80.0A0A078JWS8_BRANA; BnaCnng66450D protein
STRINGBo4g165160.11e-158(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58622748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.14e-95C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]