PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00096061001

Common Name

GSBRNA2T00096061001, LOC106379763

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 265aa MW: 28218.4 Da PI: 6.5015

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00096061001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.1	8.9e-05	153	192	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +r+ ++++ L++l+ + +K + a++L +A+ YIk Lq GSBRNA2T00096061001 153 VRKERLGERIAALQQLVSPY-----GKTDAASVLHEAMGYIKFLQ 192 67788999*******999.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.839	142	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-11	150	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.01E-4	151	196	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.9E-7	152	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MGDTREDQED RAMMETAGVS SFSELLMLSG GVLSSSDHHL NDIGADGGED SFGFVFSGST 60 GSRMLCFSGD CQNDDESLFL QPSLPSGVSV SDPSCTTNIC KNSNDACADN KSTKSSTKKR 120 IGSVNGQTMD HNRKPSKKCK QNQEKPSVGT AKVRKERLGE RIAALQQLVS PYGKTDAASV 180 LHEAMGYIKF LQDQIQVLCS PYLTNYSLDG GVVTGDVRAG KKVRDLRSRG LCLVPVSSTV 240 LLESSNGADF WSPATMGHTT SSSH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00096061001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009111836.1	0.0	PREDICTED: transcription factor bHLH113-like isoform X1
Refseq	XP_013675099.1	0.0	transcription factor bHLH113 isoform X1
Swissprot	Q9LT67	1e-146	BH113_ARATH; Transcription factor bHLH113
TrEMBL	A0A078IJH5	0.0	A0A078IJH5_BRANA; BnaA01g26110D protein
TrEMBL	A0A3P5ZX88	0.0	A0A3P5ZX88_BRACM; Uncharacterized protein
TrEMBL	M4FAU6	0.0	M4FAU6_BRARP; Uncharacterized protein
STRING	Bra038211.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7402	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	1e-129	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	106379763

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]