PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00096130001
Common NameGSBRNA2T00096130001, LOC106444623
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 251aa    MW: 28799.2 Da    PI: 8.8673
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00096130001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.6e-141663148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++eEde+l   +  +G  +W+t++ + g+ R +k+c++rw +yl
  GSBRNA2T00096130001 16 KGFWSPEEDEKLRSFILSHGHSCWTTVPIKAGLQRNGKSCRLRWINYL 63
                         688*******************************************97 PP
2Myb_DNA-binding44.73.1e-1474114648
                          HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +eE+e+++  +  lG++ W++Ia+ ++ gRt++++k++w+++l
  GSBRNA2T00096130001  74 AEEEEIILTFHSSLGNK-WSRIAKFLP-GRTDNEIKNYWHSHL 114
                          7****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.9431163IPR017930Myb domain
SuperFamilySSF466896.36E-2713110IPR009057Homeodomain-like
SMARTSM007171.3E-91565IPR001005SANT/Myb domain
PfamPF002491.2E-111763IPR001005SANT/Myb domain
CDDcd001676.55E-81963No hitNo description
Gene3DG3DSA:1.10.10.604.0E-201970IPR009057Homeodomain-like
PROSITE profilePS5129421.6264118IPR017930Myb domain
SMARTSM007172.1E-1268116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-2371118IPR009057Homeodomain-like
CDDcd001676.71E-1073114No hitNo description
PfamPF002492.7E-1274114IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MLKTIAVERP KQRQRKGFWS PEEDEKLRSF ILSHGHSCWT TVPIKAGLQR NGKSCRLRWI  60
NYLRPGLKRD MINAEEEEII LTFHSSLGNK WSRIAKFLPG RTDNEIKNYW HSHLKKKWLK  120
SQKLQHATSI STSSESLVAC GRRNPQTLIS LPEKTSSSPS QESNDNNNNY SCSSGPEIAR  180
LFFSEWFTSS DPYFDHSSNL TDSNHIQTPN IQGPVSDYEE SGDVNQFYYN EMVMMSNSNW  240
TLNDVVFGSK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-24161177107B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at very low level. Expressed in cauline leaves. {ECO:0000269|PubMed:11581165}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00096130001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196091e-130AY519609.1 Arabidopsis thaliana MYB transcription factor (At4g25560) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013741531.10.0transcription factor LAF1
SwissprotQ9M0K41e-129LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A078IJW60.0A0A078IJW6_BRANA; BnaA03g47510D protein
STRINGBra019154.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.11e-105myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]