PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00096236001

Common Name

GSBRNA2T00010887001, GSBRNA2T00096236001, LOC106406046

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GeBP

Protein Properties

Length: 311aa MW: 35251.9 Da PI: 9.3456

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00096236001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	86	4.8e-27	87	175	4	97
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 +rl+se+DeivlLqG+id +gk+p ++ fy+ +k+s sf+v+ +q+++Kir+++k +++++ + +++ s+ ++h+qk+f+lsk GSBRNA2T00096236001 87 KRLFSEKDEIVLLQGIIDS---KGKNPLKNKRSFYQSMKGSFSFDVTLRQFSDKIRHMQKLYTRNEMR--GEQQASVLNPHQQKCFQLSK 171 79**************8...9***************************************99..99999*********** PP DUF573 94 kiWg 97 iWg GSBRNA2T00096236001 172 AIWG 175 *8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.8E-23	87	175	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MANNLKHPFE DPPSSPSSSA SEDQNLQTIF SSEEDEPEDP PPRSGSKKDV CGSSESQLTG 60 KKRLSSNASS NVAKRICTRG GKMGTDKRLF SEKDEIVLLQ GIIDSKGKNP LKNKRSFYQS 120 MKGSFSFDVT LRQFSDKIRH MQKLYTRNEM RGEQQASVLN PHQQKCFQLS KAIWGADGIA 180 FESAISSNSK SEESERRRVT KKRDFVTSRK GKNVQEAIKR GDMEKSPYVE IESDWDESSF 240 FLGMDFLKEK WTKVPPTETK KKTQEKMKKL HANELECQKF EEMLKVMKDK CAHDKVELLN 300 EVTSLIMAAD *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00096236001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022556779.1	0.0	probable transcription factor At1g66420 isoform X1
TrEMBL	A0A078IVX1	0.0	A0A078IVX1_BRANA; BnaC07g47850D protein
STRING	Bo4g136340.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13542	7	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66420.1	2e-27	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Entrez Gene	106406046

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]