PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00096238001
Common NameGSBRNA2T00096238001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 169aa    MW: 19107.8 Da    PI: 9.6193
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00096238001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.16.2e-3174128155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k+rlrW+++LH++Fv+ave+LGG++kAtPk+++++m+v+g++l+hvkSHLQk+Rl
  GSBRNA2T00096238001  74 KARLRWSSDLHACFVKAVEKLGGPDKATPKAVKDTMEVEGIALHHVKSHLQKFRL 128
                          68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.1E-2771128IPR009057Homeodomain-like
SuperFamilySSF466891.31E-1373128IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-2574129IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MSSQELKKKE KGKEIVTSEE NPTTSEVSMY FSEQGIAALL EANKKDNAEK VGTQQKKSSS  60
SKIKPCIFYT SDEKARLRWS SDLHACFVKA VEKLGGPDKA TPKAVKDTME VEGIALHHVK  120
SHLQKFRLGR CNIRDETDQY HKRMFSSIAL SFRFYVFFFG TILVENSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-1974130157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-1974130157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-1974130157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-1974130157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00096238001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013701405.22e-99myb-related protein 2-like
TrEMBLA0A078IJT71e-121A0A078IJT7_BRANA; BnaC07g47860D protein
STRINGBra015134.1-P3e-85(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134061520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G06020.16e-63G2-like family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]