PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00096432001

Common Name

GSBRNA2T00096432001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB

Protein Properties

Length: 335aa MW: 37301.5 Da PI: 8.1411

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00096432001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.6	2.1e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l d+++++G+g +W + + + g++R++k+c++rw++yl GSBRNA2T00096432001 14 RGPWSPEEDAKLRDYIEKYGNGgNWISLPLKAGLRRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	41.8	2.5e-13	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ +++ G++ W+ Ia++++ gRt++++k++w++ GSBRNA2T00096432001 69 GDFSEEEDRIIFSLFAAVGSR-WSIIAAHLP-GRTDNDIKNYWNT 111 789****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.374	9	62	IPR017930	Myb domain
SuperFamily	SSF46689	1.39E-27	12	109	IPR009057	Homeodomain-like
SMART	SM00717	9.0E-12	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	4.3E-15	14	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.5E-24	15	69	IPR009057	Homeodomain-like
CDD	cd00167	3.05E-9	16	62	No hit	No description
PROSITE profile	PS51294	24.103	63	117	IPR017930	Myb domain
SMART	SM00717	6.4E-14	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	2.6E-12	69	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-23	70	117	IPR009057	Homeodomain-like
CDD	cd00167	1.26E-10	71	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MGRAPCCDKT KVKRGPWSPE EDAKLRDYIE KYGNGGNWIS LPLKAGLRRC GKSCRLRWLN 60 YLRPNIKHGD FSEEEDRIIF SLFAAVGSRW SIIAAHLPGR TDNDIKNYWN TKLRKKIMSS 120 SSSSSSHSSA AMATPFLNPN SHDVKRPITP SATIAPFSYN PYVENSTTSL ISNINGFEAD 180 DQQIFPFFNP NYPHDFSLED MSSNNNNNIS GTSGFLLNHS MCDHYSNHTN FSSDVNGKRS 240 EIMMKQEEMM MIDHHIDQMT KGYNGDFTQG YYNNDINGHG DLKQMISGTG TNSNINMGGS 300 GSGSASSSSF ISNLAENKTS SSLLKHKCLP YFYS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-28	14	117	7	108	B-MYB
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Accumulates in an adaxial ball-shaped set of cells in three to five cell layers around the L3 layer of the shoot apical meristem (SAM) in youg plantlets. Later, expressed transiently at the center of the boundary between the SAM and developing leaf primordia. In the inflorescence meristem, confined to the axils of flower primordia. {ECO:0000269\|PubMed:16461581, ECO:0000269\|PubMed:16473968}.
Uniprot	TISSUE SPECIFICITY: Mostly expressed in roots. Also present in shoot tips and flower buds. {ECO:0000269\|PubMed:16461581}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of genes involved in the regulation of meristematic competence, such as CUC2. Positively regulates axillary meristems (AMs) formation and development, especially at early phases of vegetative growth, probably by specifying a stem cell niche for AM formation. Modulates the negative regulation mediated by gibberellic acid on the timing of developmental phase transitions. {ECO:0000269\|PubMed:16461581, ECO:0000269\|PubMed:16473968}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00096432001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By a shift from short days to long days, in the axils of primordia on the elongating stem. {ECO:0000269\|PubMed:16461581}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009120615.1	0.0	PREDICTED: transcription factor RAX1-like
Refseq	XP_013665867.1	0.0	transcription factor RAX1-like
Swissprot	Q9FG68	1e-165	RAX1_ARATH; Transcription factor RAX1
TrEMBL	A0A078IK16	0.0	A0A078IK16_BRANA; BnaA10g13590D protein
STRING	Bra002448.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14013	16	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23000.1	1e-149	myb domain protein 37

Publications ? help Back to Top
Schnaubelt D,Schulz P,Hannah MA,Yocgo RE,Foyer CH A phenomics approach to the analysis of the influence of glutathione on leaf area and abiotic stress tolerance in Arabidopsis thaliana. Front Plant Sci, 2013. 4: p. 416 [PMID:24204368] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Guo D, et al. The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. Plant Cell, 2015. 27(11): p. 3112-27 [PMID:26578700] Yu YT, et al. Overexpression of the MYB37 transcription factor enhances abscisic acid sensitivity, and improves both drought tolerance and seed productivity in Arabidopsis thaliana. Plant Mol. Biol., 2016. 90(3): p. 267-79 [PMID:26646286]