PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00096548001
Common NameGSBRNA2T00096548001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 142aa    MW: 15984 Da    PI: 7.5676
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00096548001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.53.5e-092861337
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                          WT++E e++++a ++ G + Wk++a+ + ++R+ 
  GSBRNA2T00096548001 28 QWTKDELERFYEAYQKQGRD-WKKVAASVENNRSV 61
                         6*****************77.********999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.72E-82771IPR009057Homeodomain-like
PfamPF002491.3E-72864IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-52860IPR009057Homeodomain-like
CDDcd001673.46E-42964No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
PHNANKNFNK EASPQSKTKK LKKKLGPQWT KDELERFYEA YQKQGRDWKK VAASVENNRS  60
VDMVEALFSM NQPYLSLPEA SVDGLAAIMT AHYNLFEETE SKGEGHDASG VTRGFPIKKL  120
HDAEDLDKQC TLILYSYGQC L*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269|PubMed:15246533}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00096548001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614922.16e-79PREDICTED: protein ALWAYS EARLY 2-like
RefseqXP_013678922.22e-75DNA topoisomerase 2-like
SwissprotQ6A3312e-38ALY1_ARATH; Protein ALWAYS EARLY 1
TrEMBLA0A078JUI71e-102A0A078JUI7_BRANA; BnaCnng66770D protein (Fragment)
STRINGBo01274s020.12e-75(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2125155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.22e-20DNA binding
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Pfaff C, et al.
    ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development.
    Plant Physiol., 2018. 177(1): p. 226-240
    [PMID:29540591]