PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00096785001
Common NameGSBRNA2T00096785001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 182aa    MW: 21017.8 Da    PI: 10.2224
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00096785001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.71e-0597119123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C++C+k F r  nL+ H r H
  GSBRNA2T00096785001  97 FICEICNKGFQRDQNLQLHKRGH 119
                          89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.54E-595120No hitNo description
Gene3DG3DSA:3.30.160.602.0E-696119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121718.8E-697119IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.80397119IPR007087Zinc finger, C2H2
SMARTSM003550.02297119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
SMARTSM00355100139169IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MMMNKDMLYH HQQQQVEENM SNLTSASGDR ASVSSGNRTE TSGSNFHYNT NPNQQQEEQC  60
LAPQPSQKKK RNQPGNPDPE AEVLALSPKT LMATNRFICE ICNKGFQRDQ NLQLHKRGHN  120
LPWKLKQRSN KDVIRKKVYV CPEPNCVHHH PSRALGDLTG IKKHFFRKHG EKKWKCDKCS  180
KK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123136KLKQRSNKDVIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00096785001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529940.0AK352994.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-12-L02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013630324.11e-133PREDICTED: protein indeterminate-domain 7-like
RefseqXP_013712246.11e-133protein indeterminate-domain 7-like
SwissprotQ8H1F51e-108IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A078JX021e-135A0A078JX02_BRANA; BnaCnng66930D protein (Fragment)
TrEMBLA0A0D3BN381e-132A0A0D3BN38_BRAOL; Uncharacterized protein
STRINGBo3g184730.11e-133(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-102indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]