PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00096829001
Common NameGSBRNA2T00096829001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 215aa    MW: 24250.8 Da    PI: 6.0554
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00096829001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.0018139161123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C  Cgk+F +   L  H  +H
  GSBRNA2T00096829001 139 FICDVCGKVFGSYQALGGHRTSH 161
                          89********9999998888776 PP
2zf-C2H215.26.3e-05190212123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ Cg+ F +   L  H++tH
  GSBRNA2T00096829001 190 HQCGVCGREFESGQALGGHMKTH 212
                          79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.17E-8137212No hitNo description
PfamPF139125.2E-12139162IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.408139166IPR007087Zinc finger, C2H2
SMARTSM003550.044139161IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280141161IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.7E-4186212IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.1E-10189213IPR007087Zinc finger, C2H2
SMARTSM003550.021190212IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.138190214IPR007087Zinc finger, C2H2
PROSITE patternPS000280192212IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MMSESASGST LPSLETSNNE TRCWGTRSKE RRRCTSNKRR GKDDPGLILV ALSKGQRPEN  60
SQNWNAIDRL LAAPNGKEEY YETDLDSDDD NKEVKYKSVA ELLTQNVETL TEDIDEDDED  120
NDADGTNLVT REKKCKKEFI CDVCGKVFGS YQALGGHRTS HKCKRLKICD KNDQDRELVP  180
NKKNDQDRRH QCGVCGREFE SGQALGGHMK THYI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00096829001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325420.0AC232542.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005L20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013617951.11e-121PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A078JX161e-157A0A078JX16_BRANA; BnaUnng03680D protein
STRINGBo2g161550.11e-120(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141711523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61470.12e-26C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]